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Sodium in PDB 4nm1: Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position
Enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position
All present enzymatic activity of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position, PDB code: 4nm1
was solved by
M.-C.Koag,
K.Min,
A.F.Monzingo,
S.Lee,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 52.71 / 2.42 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 50.749, 80.114, 55.272, 90.00, 107.52, 90.00 |
| R / Rfree (%) | 19.8 / 25.6 |
Other elements in 4nm1:
The structure of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position also contains other interesting chemical elements:
| Bromine | (Br) | 1 atom |
| Magnesium | (Mg) | 2 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position
(pdb code 4nm1). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position, PDB code: 4nm1:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position, PDB code: 4nm1:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 4nm1
Go back to
Sodium Binding Sites List in 4nm1
Sodium binding site 1 out
of 2 in the Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position within 5.0Å range:
|
Sodium binding site 2 out of 2 in 4nm1
Go back to
Sodium Binding Sites List in 4nm1
Sodium binding site 2 out
of 2 in the Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Structure of Human Dna Polymerase Beta Complexed with A Nicked Dna Containing A 8BRG-C at N-1 Position and G-C at N Position within 5.0Å range:
|
Reference:
M.C.Koag,
K.Min,
S.Lee.
Structural Basis For Promutagenicity of 8-Halogenated Guanine. J.Biol.Chem. V. 289 6289 2014.
ISSN: ISSN 0021-9258
PubMed: 24425881
DOI: 10.1074/JBC.M113.537803
Page generated: Mon Oct 7 17:15:58 2024
ISSN: ISSN 0021-9258
PubMed: 24425881
DOI: 10.1074/JBC.M113.537803
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