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Sodium in PDB 4nly: Poliovirus Polymerase - C290E Loop Mutant

Enzymatic activity of Poliovirus Polymerase - C290E Loop Mutant

All present enzymatic activity of Poliovirus Polymerase - C290E Loop Mutant:
2.7.7.48;

Protein crystallography data

The structure of Poliovirus Polymerase - C290E Loop Mutant, PDB code: 4nly was solved by A.J.Sholders, O.B.Peersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.81 / 2.30
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 128.802, 128.802, 111.679, 90.00, 90.00, 120.00
R / Rfree (%) 21.5 / 23.9

Other elements in 4nly:

The structure of Poliovirus Polymerase - C290E Loop Mutant also contains other interesting chemical elements:

Arsenic (As) 3 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Poliovirus Polymerase - C290E Loop Mutant (pdb code 4nly). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Poliovirus Polymerase - C290E Loop Mutant, PDB code: 4nly:

Sodium binding site 1 out of 1 in 4nly

Go back to Sodium Binding Sites List in 4nly
Sodium binding site 1 out of 1 in the Poliovirus Polymerase - C290E Loop Mutant


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Poliovirus Polymerase - C290E Loop Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na908

b:33.9
occ:1.00
O A:GLY285 2.6 27.5 1.0
O A:LEU268 2.6 23.4 1.0
O A:GLY284 2.7 26.4 1.0
O A:ASN269 2.7 26.1 1.0
O A:HOH1099 2.7 35.5 1.0
OG A:SER271 2.8 28.6 1.0
C A:ASN269 3.5 27.6 1.0
C A:GLY284 3.5 26.5 1.0
C A:GLY285 3.6 26.9 1.0
C A:LEU268 3.8 25.2 1.0
CB A:SER271 3.9 30.8 1.0
O A:VAL282 4.0 27.6 1.0
CA A:ASN269 4.0 26.0 1.0
N A:SER271 4.1 30.1 1.0
CA A:GLY285 4.1 26.0 1.0
N A:GLY285 4.2 26.7 1.0
CG1 A:VAL282 4.2 28.2 1.0
N A:GLY284 4.2 25.4 1.0
CB A:VAL282 4.3 27.5 1.0
N A:ASN269 4.3 24.6 1.0
CA A:GLY284 4.4 25.7 1.0
N A:HIS270 4.4 28.6 1.0
CD A:PRO287 4.5 29.4 1.0
C A:VAL282 4.5 27.6 1.0
NE2 A:HIS273 4.6 29.4 1.0
CA A:SER271 4.6 29.5 1.0
CG A:PRO287 4.7 31.7 1.0
CA A:HIS270 4.7 29.8 1.0
C A:HIS270 4.8 29.7 1.0
N A:MET286 4.8 26.9 1.0
C A:LYS283 5.0 26.7 1.0

Reference:

A.J.Sholders, O.B.Peersen. Distinct Conformations of A Putative Translocation Element in Poliovirus Polymerase. J.Mol.Biol. V. 426 1407 2014.
ISSN: ISSN 0022-2836
PubMed: 24424421
DOI: 10.1016/J.JMB.2013.12.031
Page generated: Tue Dec 15 06:55:42 2020

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