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Sodium in PDB 4mr1: X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II)

Enzymatic activity of X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II)

All present enzymatic activity of X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II):
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II), PDB code: 4mr1 was solved by A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.23 / 1.99
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.017, 77.017, 36.834, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 23.4

Other elements in 4mr1:

The structure of X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II) also contains other interesting chemical elements:

Platinum (Pt) 2 atoms
Iodine (I) 4 atoms
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II) (pdb code 4mr1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II), PDB code: 4mr1:

Sodium binding site 1 out of 1 in 4mr1

Go back to Sodium Binding Sites List in 4mr1
Sodium binding site 1 out of 1 in the X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of X-Ray Structure of the Adduct Between Hen Egg White Lysozyme and Cis- Diamminediiodoplatinum(II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na204

b:31.9
occ:1.00
O A:SER60 2.3 27.2 1.0
O A:HOH310 2.5 21.5 1.0
OG A:SER72 2.6 38.6 1.0
O A:ARG73 2.7 40.9 1.0
O A:CYS64 2.7 27.0 1.0
O A:HOH351 2.7 40.4 1.0
CB A:SER72 3.3 40.4 1.0
C A:SER60 3.5 28.6 1.0
C A:ARG73 3.7 39.6 1.0
C A:CYS64 3.7 27.1 1.0
CA A:ASN65 3.9 26.5 1.0
N A:ARG73 4.0 39.2 1.0
CA A:SER60 4.2 25.9 1.0
C A:SER72 4.2 39.5 1.0
N A:ASN65 4.2 25.9 1.0
CB A:SER60 4.4 24.2 1.0
CA A:SER72 4.4 38.8 1.0
O A:ARG61 4.4 34.9 1.0
N A:ASN74 4.5 36.8 1.0
C A:ARG61 4.5 32.7 1.0
OD1 A:ASN65 4.5 27.1 1.0
CA A:ARG73 4.5 40.3 1.0
N A:CYS64 4.5 26.0 1.0
CA A:ASN74 4.5 36.1 1.0
N A:ARG61 4.6 29.9 1.0
N A:ASP66 4.6 27.1 1.0
CL A:CL203 4.6 38.3 1.0
CB A:THR69 4.6 28.2 1.0
O A:SER72 4.7 39.0 1.0
CA A:ARG61 4.7 33.6 1.0
CB A:ASN65 4.8 25.6 1.0
C A:ASN65 4.8 26.3 1.0
CA A:CYS64 4.8 22.9 1.0
CB A:ASN74 4.8 34.4 1.0
N A:TRP62 4.8 32.1 1.0
O A:THR69 4.9 28.6 1.0
OG A:SER60 5.0 25.1 1.0
OD1 A:ASP66 5.0 22.6 1.0

Reference:

L.Messori, T.Marzo, C.Gabbiani, A.A.Valdes, A.G.Quiroga, A.Merlino. Peculiar Features in the Crystal Structure of the Adduct Formed Between Cis-PTI2(NH3)2 and Hen Egg White Lysozyme. Inorg.Chem. V. 52 13827 2013.
ISSN: ISSN 0020-1669
PubMed: 24256441
DOI: 10.1021/IC402611M
Page generated: Tue Dec 15 06:54:36 2020

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