Sodium in PDB 4mpt: Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I

The structure of Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I, PDB code: 4mpt was solved by Y.Kim, G.Joachimiak, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.28 / 1.75
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	86.565, 86.565, 194.053, 90.00, 90.00, 120.00
R / Rfree (%)	16 / 17.6

The binding sites of Sodium atom in the Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I (pdb code 4mpt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I, PDB code: 4mpt:

Sodium binding site 1 out of 1 in the Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:24.8 occ:1.00 O A:THR282 2.3 25.5 1.0 O B:ACY401 2.4 28.7 1.0 O A:GLY287 2.4 23.6 1.0 O B:THR282 2.5 26.4 1.0 O A:ASP283 2.6 22.1 1.0 C A:GLY287 3.2 21.4 1.0 C A:THR282 3.2 24.7 1.0 C B:ACY401 3.3 28.1 1.0 C A:ASP283 3.3 18.9 1.0 C B:THR282 3.7 23.4 1.0 CA A:GLY287 3.8 15.8 1.0 OXT B:ACY401 3.8 37.4 1.0 N A:GLY287 3.8 16.1 1.0 N A:ASP283 3.9 24.6 1.0 CA A:ASP283 3.9 20.1 1.0 O B:ASP283 4.0 19.9 1.0 N A:ASN288 4.1 22.1 1.0 CB A:THR282 4.2 29.3 1.0 N A:ARG284 4.2 17.3 1.0 C B:ASP283 4.2 19.6 1.0 CA B:ASP283 4.2 21.8 1.0 CA A:THR282 4.3 25.9 1.0 CA A:ASN288 4.4 24.4 1.0 OG1 B:THR282 4.4 21.9 1.0 CH3 B:ACY401 4.4 24.8 1.0 N B:ASP283 4.4 23.6 1.0 OG1 A:THR282 4.5 26.6 1.0 CA A:ARG284 4.5 18.1 1.0 O B:GLY287 4.5 21.2 1.0 CB B:THR282 4.8 23.9 1.0 O A:HOH529 4.8 18.5 1.0 CA B:THR282 4.9 23.5 1.0 N B:ARG284 5.0 16.8 1.0 C A:TRP286 5.0 18.2 1.0

Y.Kim, G.Joachimiak, S.Clancy, A.Joachimiak. Crystal Structure of Periplasmic Binding Protein Type 1 From Bordetella Pertussis Tohama I To Be Published.