Sodium in PDB 4mpr: Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?

Enzymatic activity of Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?

All present enzymatic activity of Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?:
4.1.1.7;

Protein crystallography data

The structure of Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?, PDB code: 4mpr was solved by F.H.Andrews, M.J.Mcleish, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	47.99 / 1.40
*Space group*	I 2 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	80.976, 95.971, 137.349, 90.00, 90.00, 90.00
*R / R_free (%)*	12.4 / 15

Other elements in 4mpr:

The structure of Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity? also contains other interesting chemical elements:

Calcium	(Ca)	3 atoms
Chlorine	(Cl)	1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity? (pdb code 4mpr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?, PDB code: 4mpr:

Sodium binding site 1 out of 1 in 4mpr

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Sodium Binding Sites List in 4mpr

Sodium binding site 1 out of 1 in the Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity?

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Benzoylformate Decarboxylase: Is the Tetramer Vital For Activity? within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na609 b:30.0 occ:1.00	O	A:HOH894	2.2	23.6	1.0
	O	A:HOH857	2.3	18.4	1.0
	O	A:HOH925	2.4	26.4	1.0
	OE1	A:GLU141	2.5	11.2	1.0
	O	A:HOH897	2.5	22.7	1.0
	OE2	A:GLU141	2.6	11.3	1.0
	CD	A:GLU141	2.9	9.1	1.0
	O	A:HOH765	4.3	15.2	1.0
	O	A:HOH1148	4.4	31.5	1.0
	CG	A:GLU141	4.4	9.3	1.0
	CE1	A:HIS137	4.5	10.7	1.0
	NE1	A:TRP125	4.8	10.1	1.0

Reference:

F.H.Andrews, M.P.Rogers, L.N.Paul, M.J.Mcleish. Perturbation of the Monomer-Monomer Interfaces of the Benzoylformate Decarboxylase Tetramer. Biochemistry V. 53 4358 2014.
ISSN: ISSN 0006-2960
PubMed: 24956165
DOI: 10.1021/BI500081R

Page generated: Mon Oct 7 17:03:45 2024

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