Atomistry » Sodium » PDB 4mfc-4mzx » 4mnb
Atomistry »
  Sodium »
    PDB 4mfc-4mzx »
      4mnb »

Sodium in PDB 4mnb: Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna

Protein crystallography data

The structure of Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna, PDB code: 4mnb was solved by A.Canals, R.Arribas-Bosacoma, M.Alvarez, F.Albericio, J.Aymami, M.Coll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.79 / 1.40
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 28.700, 53.400, 40.800, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 25.3

Other elements in 4mnb:

The structure of Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna also contains other interesting chemical elements:

Cobalt (Co) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna (pdb code 4mnb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna, PDB code: 4mnb:

Sodium binding site 1 out of 1 in 4mnb

Go back to Sodium Binding Sites List in 4mnb
Sodium binding site 1 out of 1 in the Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na103

b:30.4
occ:0.25
OP2 B:DG8 2.7 34.1 1.0
P B:DG8 4.2 34.4 1.0
O5' B:DG8 4.8 29.4 1.0
C5' B:DG8 4.8 27.3 1.0
O4' B:DG8 4.9 22.7 1.0

Reference:

A.Canals, R.Arribas-Bosacoma, M.Alvarez, F.Albericio, J.Aymami, M.Coll. Crystal Structure of A Complex Between the Marine Anticancer Drug Variolin B and Dna To Be Published.
Page generated: Mon Oct 7 17:03:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy