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Sodium in PDB 4mb6: Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis.

Enzymatic activity of Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis.

All present enzymatic activity of Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis.:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis., PDB code: 4mb6 was solved by G.C.Pavithra, J.Kim, R.P.Hegde, S.C.Almo, U.A.Ramagopal, New Yorkstructural Genomics Research Consortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.19 / 1.81
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 58.560, 78.380, 54.010, 90.00, 112.98, 90.00
R / Rfree (%) 18.4 / 23.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis. (pdb code 4mb6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis., PDB code: 4mb6:

Sodium binding site 1 out of 1 in 4mb6

Go back to Sodium Binding Sites List in 4mb6
Sodium binding site 1 out of 1 in the Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na501

b:44.1
occ:1.00
O A:HOH629 2.3 54.5 1.0
O A:ILE120 2.3 44.2 1.0
O A:HOH627 2.3 44.5 1.0
O A:THR117 2.3 40.5 1.0
O A:HOH628 2.5 52.5 1.0
C A:ILE120 3.4 43.1 1.0
C A:THR117 3.5 39.6 1.0
CA A:GLN121 4.0 51.6 1.0
CA A:ASP118 4.0 43.5 1.0
N A:ASP118 4.2 43.4 1.0
N A:GLN121 4.2 46.2 1.0
CB A:GLN121 4.2 52.8 1.0
C A:ASP118 4.3 47.7 1.0
N A:ILE120 4.3 36.5 1.0
CB A:LEU149 4.4 38.7 1.0
O A:LEU149 4.5 44.4 1.0
CA A:ILE120 4.5 37.8 1.0
CA A:THR117 4.5 36.8 1.0
CD2 A:LEU149 4.5 42.1 1.0
O A:ASP118 4.6 46.2 1.0
N A:SER119 4.7 39.4 1.0
CG A:LEU149 4.8 38.7 1.0
CD1 A:LEU149 4.9 39.5 1.0
CB A:THR117 4.9 43.2 1.0

Reference:

G.C.Pavithra, J.Kim, R.P.Hegde, S.C.Almo, U.A.Ramagopal. Crystal Structure of Adenine Phosphoribosyltransferase From Yersinia Pseudotuberculosis To Be Published.
Page generated: Tue Dec 15 06:54:05 2020

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