Sodium in PDB 4map: Crystal Structure of Ara H 8 Purified with Heating

The structure of Crystal Structure of Ara H 8 Purified with Heating, PDB code: 4map was solved by L.R.Offermann, B.K.Hurlburt, K.A.Majorek, J.K.Mcbride, S.J.Maleki, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.46 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.922, 87.113, 42.863, 90.00, 96.74, 90.00
R / Rfree (%)	19.7 / 25.2

The binding sites of Sodium atom in the Crystal Structure of Ara H 8 Purified with Heating (pdb code 4map). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ara H 8 Purified with Heating, PDB code: 4map:

Sodium binding site 1 out of 1 in the Crystal Structure of Ara H 8 Purified with Heating


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ara H 8 Purified with Heating within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:49.0 occ:1.00 O B:HOH362 1.9 37.7 1.0 O B:PRO31 2.4 26.0 1.0 O B:HOH331 2.6 40.1 1.0 O B:VAL37 2.6 25.9 1.0 O B:ILE34 2.7 29.0 1.0 O B:ASP35 2.8 28.9 1.0 C B:ASP35 3.4 29.7 1.0 CA B:ASP35 3.5 27.1 1.0 C B:ILE34 3.6 28.0 1.0 C B:PRO31 3.6 26.2 1.0 C B:VAL37 3.7 23.8 1.0 N B:ASP35 4.0 28.9 1.0 CA B:PRO31 4.2 27.1 1.0 N B:VAL37 4.2 26.0 1.0 CD B:LYS38 4.3 30.2 1.0 NZ B:LYS38 4.3 31.3 1.0 N B:ASP36 4.4 25.8 1.0 CA B:VAL37 4.5 23.1 1.0 N B:LYS38 4.6 23.7 1.0 CA B:LYS38 4.6 25.4 1.0 N B:LYS32 4.7 24.5 1.0 O B:HOH355 4.7 47.4 1.0 O B:LYS32 4.7 30.7 1.0 OD1 B:ASP35 4.7 34.6 1.0 C B:ASP36 4.8 26.3 1.0 CB B:PRO31 4.8 27.2 1.0 CA B:ILE34 4.8 28.6 1.0 C B:LYS32 4.9 27.4 1.0 N B:ILE34 4.9 27.4 1.0 CE B:LYS38 4.9 31.9 1.0 CB B:ASP35 4.9 29.4 1.0 CA B:LYS32 5.0 26.5 1.0

B.K.Hurlburt, L.R.Offermann, J.K.Mcbride, K.A.Majorek, S.J.Maleki, M.Chruszcz. Structure and Function of the Peanut Panallergen Ara H 8. J.Biol.Chem. V. 288 36890 2013.
ISSN: ISSN 0021-9258
PubMed: 24253038
DOI: 10.1074/JBC.M113.517797