Atomistry » Sodium » PDB 4lzg-4mf2 » 4map
Atomistry »
  Sodium »
    PDB 4lzg-4mf2 »
      4map »

Sodium in PDB 4map: Crystal Structure of Ara H 8 Purified with Heating

Protein crystallography data

The structure of Crystal Structure of Ara H 8 Purified with Heating, PDB code: 4map was solved by L.R.Offermann, B.K.Hurlburt, K.A.Majorek, J.K.Mcbride, S.J.Maleki, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.46 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.922, 87.113, 42.863, 90.00, 96.74, 90.00
R / Rfree (%) 19.7 / 25.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Ara H 8 Purified with Heating (pdb code 4map). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Ara H 8 Purified with Heating, PDB code: 4map:

Sodium binding site 1 out of 1 in 4map

Go back to Sodium Binding Sites List in 4map
Sodium binding site 1 out of 1 in the Crystal Structure of Ara H 8 Purified with Heating


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Ara H 8 Purified with Heating within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:49.0
occ:1.00
O B:HOH362 1.9 37.7 1.0
O B:PRO31 2.4 26.0 1.0
O B:HOH331 2.6 40.1 1.0
O B:VAL37 2.6 25.9 1.0
O B:ILE34 2.7 29.0 1.0
O B:ASP35 2.8 28.9 1.0
C B:ASP35 3.4 29.7 1.0
CA B:ASP35 3.5 27.1 1.0
C B:ILE34 3.6 28.0 1.0
C B:PRO31 3.6 26.2 1.0
C B:VAL37 3.7 23.8 1.0
N B:ASP35 4.0 28.9 1.0
CA B:PRO31 4.2 27.1 1.0
N B:VAL37 4.2 26.0 1.0
CD B:LYS38 4.3 30.2 1.0
NZ B:LYS38 4.3 31.3 1.0
N B:ASP36 4.4 25.8 1.0
CA B:VAL37 4.5 23.1 1.0
N B:LYS38 4.6 23.7 1.0
CA B:LYS38 4.6 25.4 1.0
N B:LYS32 4.7 24.5 1.0
O B:HOH355 4.7 47.4 1.0
O B:LYS32 4.7 30.7 1.0
OD1 B:ASP35 4.7 34.6 1.0
C B:ASP36 4.8 26.3 1.0
CB B:PRO31 4.8 27.2 1.0
CA B:ILE34 4.8 28.6 1.0
C B:LYS32 4.9 27.4 1.0
N B:ILE34 4.9 27.4 1.0
CE B:LYS38 4.9 31.9 1.0
CB B:ASP35 4.9 29.4 1.0
CA B:LYS32 5.0 26.5 1.0

Reference:

B.K.Hurlburt, L.R.Offermann, J.K.Mcbride, K.A.Majorek, S.J.Maleki, M.Chruszcz. Structure and Function of the Peanut Panallergen Ara H 8. J.Biol.Chem. V. 288 36890 2013.
ISSN: ISSN 0021-9258
PubMed: 24253038
DOI: 10.1074/JBC.M113.517797
Page generated: Tue Dec 15 06:54:01 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy