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Sodium in PDB 4ma5: The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.

Enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.

All present enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.:
4.1.1.21;

Protein crystallography data

The structure of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp., PDB code: 4ma5 was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.86 / 1.81
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.943, 84.943, 106.539, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. (pdb code 4ma5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp., PDB code: 4ma5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4ma5

Go back to Sodium Binding Sites List in 4ma5
Sodium binding site 1 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:27.9
occ:1.00
 O A:GLU37 2.2 22.7 1.0
O A:HOH605 2.3 30.1 1.0
O A:VAL40 2.3 23.9 1.0
O A:HOH630 2.4 23.8 0.4
O A:HOH662 2.4 32.8 1.0
C A:GLU37 3.4 29.2 1.0
C A:VAL40 3.5 22.7 1.0
N A:VAL40 3.9 22.5 1.0
OE2 A:GLU37 4.0 40.0 1.0
CD A:GLU37 4.1 37.8 1.0
O A:LYS41 4.1 25.4 1.0
C A:GLU38 4.1 24.9 1.0
CA A:GLU38 4.1 22.8 1.0
N A:GLU38 4.2 23.9 1.0
CA A:VAL40 4.3 25.1 1.0
CG A:GLU37 4.4 29.2 1.0
O A:GLU38 4.4 21.5 1.0
C A:LYS41 4.4 24.6 1.0
N A:VAL39 4.4 20.1 1.0
CG2 A:VAL40 4.4 24.0 1.0
CA A:GLU37 4.5 23.5 1.0
N A:LYS41 4.5 23.5 1.0
OE1 A:GLU37 4.6 35.9 1.0
CA A:LYS41 4.7 23.2 1.0
C A:VAL39 4.9 21.7 1.0
N A:THR42 5.0 27.8 1.0

Sodium binding site 2 out of 2 in 4ma5

Go back to Sodium Binding Sites List in 4ma5
Sodium binding site 2 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na404

b:37.1
occ:1.00
 OE2 A:GLU101 2.3 31.5 1.0
O A:HOH666 2.4 45.6 1.0
O A:ILE260 2.4 29.8 1.0
O A:HOH607 2.6 40.6 1.0
O A:SER95 2.6 29.9 1.0
CD A:GLU101 3.2 38.3 1.0
OE1 A:GLU259 3.4 47.6 1.0
OE1 A:GLU101 3.6 40.6 1.0
C A:SER95 3.6 38.1 1.0
C A:ILE260 3.6 27.1 1.0
N A:ILE260 3.7 23.8 1.0
CA A:SER95 4.0 32.1 1.0
CB A:GLU259 4.0 28.4 1.0
CB A:SER95 4.0 37.9 1.0
O A:HOH648 4.1 45.1 1.0
CG1 A:ILE260 4.2 37.7 1.0
CA A:ILE260 4.2 25.2 1.0
CD A:GLU259 4.3 44.2 1.0
O A:HOH594 4.4 36.2 1.0
CG A:GLU259 4.5 30.2 1.0
CG A:GLU101 4.5 32.8 1.0
C A:GLU259 4.6 24.9 1.0
N A:ALA261 4.7 24.8 1.0
OE2 A:GLU69 4.7 34.5 1.0
CA A:GLU259 4.7 25.4 1.0
N A:GLN96 4.7 26.4 1.0
O A:HOH667 4.8 41.1 1.0
OG A:SER95 4.8 44.7 1.0
CB A:ILE260 4.9 33.8 1.0
CA A:ALA261 4.9 24.9 1.0

Reference:

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. To Be Published.
Page generated: Mon Oct 7 16:57:56 2024

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