Atomistry » Sodium » PDB 4m04-4mfa » 4ma5
Atomistry »
  Sodium »
    PDB 4m04-4mfa »
      4ma5 »

Sodium in PDB 4ma5: The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.

Enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.

All present enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.:
4.1.1.21;

Protein crystallography data

The structure of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp., PDB code: 4ma5 was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.86 / 1.81
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.943, 84.943, 106.539, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. (pdb code 4ma5). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp., PDB code: 4ma5:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4ma5

Go back to Sodium Binding Sites List in 4ma5
Sodium binding site 1 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:27.9
occ:1.00
 O A:GLU37 2.2 22.7 1.0
O A:HOH605 2.3 30.1 1.0
O A:VAL40 2.3 23.9 1.0
O A:HOH630 2.4 23.8 0.4
O A:HOH662 2.4 32.8 1.0
C A:GLU37 3.4 29.2 1.0
C A:VAL40 3.5 22.7 1.0
N A:VAL40 3.9 22.5 1.0
OE2 A:GLU37 4.0 40.0 1.0
CD A:GLU37 4.1 37.8 1.0
O A:LYS41 4.1 25.4 1.0
C A:GLU38 4.1 24.9 1.0
CA A:GLU38 4.1 22.8 1.0
N A:GLU38 4.2 23.9 1.0
CA A:VAL40 4.3 25.1 1.0
CG A:GLU37 4.4 29.2 1.0
O A:GLU38 4.4 21.5 1.0
C A:LYS41 4.4 24.6 1.0
N A:VAL39 4.4 20.1 1.0
CG2 A:VAL40 4.4 24.0 1.0
CA A:GLU37 4.5 23.5 1.0
N A:LYS41 4.5 23.5 1.0
OE1 A:GLU37 4.6 35.9 1.0
CA A:LYS41 4.7 23.2 1.0
C A:VAL39 4.9 21.7 1.0
N A:THR42 5.0 27.8 1.0

Sodium binding site 2 out of 2 in 4ma5

Go back to Sodium Binding Sites List in 4ma5
Sodium binding site 2 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na404

b:37.1
occ:1.00
 OE2 A:GLU101 2.3 31.5 1.0
O A:HOH666 2.4 45.6 1.0
O A:ILE260 2.4 29.8 1.0
O A:HOH607 2.6 40.6 1.0
O A:SER95 2.6 29.9 1.0
CD A:GLU101 3.2 38.3 1.0
OE1 A:GLU259 3.4 47.6 1.0
OE1 A:GLU101 3.6 40.6 1.0
C A:SER95 3.6 38.1 1.0
C A:ILE260 3.6 27.1 1.0
N A:ILE260 3.7 23.8 1.0
CA A:SER95 4.0 32.1 1.0
CB A:GLU259 4.0 28.4 1.0
CB A:SER95 4.0 37.9 1.0
O A:HOH648 4.1 45.1 1.0
CG1 A:ILE260 4.2 37.7 1.0
CA A:ILE260 4.2 25.2 1.0
CD A:GLU259 4.3 44.2 1.0
O A:HOH594 4.4 36.2 1.0
CG A:GLU259 4.5 30.2 1.0
CG A:GLU101 4.5 32.8 1.0
C A:GLU259 4.6 24.9 1.0
N A:ALA261 4.7 24.8 1.0
OE2 A:GLU69 4.7 34.5 1.0
CA A:GLU259 4.7 25.4 1.0
N A:GLN96 4.7 26.4 1.0
O A:HOH667 4.8 41.1 1.0
OG A:SER95 4.8 44.7 1.0
CB A:ILE260 4.9 33.8 1.0
CA A:ALA261 4.9 24.9 1.0

Reference:

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 in Complex with An Atp Analog, Amp-Pnp. To Be Published.
Page generated: Mon Oct 7 16:57:56 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy