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Sodium in PDB 4m9u: The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4

Enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4

All present enzymatic activity of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4:
4.1.1.21;

Protein crystallography data

The structure of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 4m9u was solved by K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.96 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.313, 85.313, 107.673, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.6

Other elements in 4m9u:

The structure of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 (pdb code 4m9u). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 4m9u:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4m9u

Go back to Sodium Binding Sites List in 4m9u
Sodium binding site 1 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:11.1
occ:1.00
 O A:HOH729 2.3 21.3 1.0
O A:VAL40 2.3 11.6 1.0
O A:GLU37 2.3 13.1 1.0
O A:HOH501 2.4 14.2 0.6
O A:HOH550 3.2 20.7 1.0
C A:GLU37 3.5 12.6 1.0
C A:VAL40 3.5 9.8 1.0
OE2 A:GLU37 3.7 35.8 1.0
O A:HOH568 3.7 23.1 0.4
N A:VAL40 4.0 11.4 1.0
O A:LYS41 4.0 13.3 1.0
CD A:GLU37 4.1 30.8 1.0
C A:GLU38 4.1 12.1 1.0
CA A:GLU38 4.1 10.0 1.0
N A:GLU38 4.3 10.2 1.0
O A:GLU38 4.3 13.0 1.0
C A:LYS41 4.3 12.6 1.0
CA A:VAL40 4.3 10.8 1.0
CG A:GLU37 4.5 16.8 1.0
N A:VAL39 4.5 10.0 1.0
N A:LYS41 4.5 11.6 1.0
CA A:GLU37 4.5 9.2 1.0
CG2 A:VAL40 4.5 11.2 1.0
OE1 A:GLU37 4.6 28.8 1.0
CA A:LYS41 4.7 11.1 1.0
N A:THR42 4.9 11.9 1.0
C A:VAL39 4.9 12.2 1.0

Sodium binding site 2 out of 2 in 4m9u

Go back to Sodium Binding Sites List in 4m9u
Sodium binding site 2 out of 2 in the The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:19.5
occ:1.00
 OE2 A:GLU101 2.3 17.7 1.0
O A:ILE260 2.3 15.6 1.0
O A:HOH683 2.4 33.5 1.0
O A:SER95 2.4 18.3 1.0
O A:HOH604 2.5 32.1 1.0
CD A:GLU101 3.2 18.2 1.0
C A:SER95 3.4 18.1 1.0
C A:ILE260 3.5 13.3 1.0
OE1 A:GLU101 3.5 20.9 1.0
N A:ILE260 3.7 12.4 1.0
CA A:SER95 3.8 15.2 1.0
CB A:SER95 3.8 19.4 1.0
CB A:GLU259 4.1 21.2 1.0
CA A:ILE260 4.2 12.7 1.0
O A:HOH631 4.2 39.1 1.0
CG1 A:ILE260 4.3 18.5 1.0
OE1 A:GLU259 4.3 38.1 1.0
O A:HOH645 4.3 38.2 1.0
OE2 A:GLU69 4.4 31.2 1.0
CG A:GLU101 4.5 16.3 1.0
N A:GLN96 4.6 15.0 1.0
N A:ALA261 4.6 11.3 1.0
C A:GLU259 4.6 12.9 1.0
OG A:SER95 4.6 20.8 1.0
CG A:GLU259 4.8 23.4 1.0
CA A:GLU259 4.8 14.8 1.0
CA A:ALA261 4.9 12.1 1.0
CB A:ILE260 4.9 16.8 1.0
O A:HOH697 4.9 35.6 1.0
CD A:GLU259 4.9 38.1 1.0
CA A:GLN96 4.9 13.9 1.0

Reference:

K.Tan, M.Zhou, K.Kwon, W.F.Anderson, A.Joachimiak. The Crystal Structure of Phosphoribosylaminoimidazole Carboxylase Atpase Subunit of Francisella Tularensis Subsp. Tularensis Schu S4 To Be Published.
Page generated: Mon Oct 7 16:57:38 2024

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