Sodium in PDB 4m7p: Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled

The structure of Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled, PDB code: 4m7p was solved by F.Wang, K.E.Helmich, W.Xu, S.Singh, J.L.Olmos Jr., E.Martinez Iii, C.A.Bingman, J.S.Thorson, G.N.Phillips Jr., Enzyme Discovery Fornatural Product Biosynthesis (Natpro), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.08 / 1.77
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	124.134, 124.134, 67.636, 90.00, 90.00, 120.00
R / Rfree (%)	15 / 18.8

The binding sites of Sodium atom in the Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled (pdb code 4m7p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled, PDB code: 4m7p:

Sodium binding site 1 out of 1 in the Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Ensemble Refinement of Protein Crystal Structure of Macrolide Glycosyltransferases Oled within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:28.5 occ:0.05 O A:HOH624 2.5 29.6 0.1 O A:HOH708 2.6 27.7 0.1 O A:ALA300 3.2 28.3 0.1 O A:ALA319 3.3 27.8 0.1 HA A:ASP301 3.5 29.1 0.1 HA A:THR320 3.5 27.5 0.1 O A:THR318 3.6 27.2 0.1 O A:HOH701 3.9 29.9 0.1 C A:ALA319 4.0 27.4 0.1 HG23 A:THR320 4.1 27.6 0.1 OG1 A:THR320 4.1 26.8 0.1 O A:HOH651 4.2 28.9 0.1 HB3 A:ALA319 4.3 28.0 0.1 CA A:THR320 4.3 27.1 0.1 C A:ALA300 4.3 28.7 0.1 N A:THR320 4.4 27.0 0.1 CA A:ASP301 4.4 29.3 0.1 O A:HOH626 4.4 29.6 0.1 OD1 A:ASP301 4.6 30.7 0.1 HD2 A:PRO321 4.6 28.1 0.1 CB A:THR320 4.6 26.8 0.1 HD3 A:PRO321 4.7 28.2 0.1 C A:THR318 4.8 27.0 0.1 CG2 A:THR320 4.8 27.2 0.1 N A:ASP301 4.9 29.2 0.1 O A:HOH673 4.9 28.3 0.1 CB A:ALA319 4.9 27.9 0.1 CA A:ALA319 4.9 27.3 0.1 O A:LEU297 4.9 27.5 0.1 HB1 A:ALA319 5.0 28.1 0.1

J.L.Olmos Jr., F.Wang, E.Martinez Iii, K.E.Helmich, S.Singh, W.Xu, C.A.Bingman, J.S.Thorson, G.N.Phillips Jr.. Crystal Structure of Macrolide Glycosyltransferases Oled To Be Published.