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Sodium in PDB 4m1n: Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9, PDB code: 4m1n was solved by L.E.Boucher, K.H.Reiter, J.Bosch, J.M.Matunis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.06 / 1.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 85.190, 90.770, 122.740, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9 (pdb code 4m1n). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9, PDB code: 4m1n:

Sodium binding site 1 out of 1 in 4m1n

Go back to Sodium Binding Sites List in 4m1n
Sodium binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Plasmodium Falciparum Ubiquitin Conjugating Enzyme UBC9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:15.9
occ:1.00
OE1 B:GLN111 2.8 15.2 1.0
O B:HOH316 3.0 15.6 1.0
N A:VAL80 3.0 9.4 1.0
CA A:THR79 3.6 10.7 1.0
CG2 A:VAL80 3.6 12.3 1.0
O A:HOH342 3.6 19.5 1.0
CD B:LYS110 3.7 19.4 1.0
CD1 B:LEU114 3.8 12.7 1.0
C A:THR79 3.8 10.1 1.0
CG2 A:THR79 3.8 14.3 1.0
CB B:GLN111 3.9 12.5 1.0
CB A:VAL80 3.9 10.0 1.0
CD B:GLN111 3.9 18.5 1.0
CA A:VAL80 4.0 9.9 1.0
CA B:GLN111 4.0 9.6 1.0
CG B:LYS110 4.1 11.8 1.0
N B:GLN111 4.1 8.8 1.0
CB A:THR79 4.2 10.3 1.0
O A:THR78 4.3 11.9 1.0
CG B:GLN111 4.4 16.9 1.0
CB B:LYS110 4.6 11.1 1.0
OG1 B:THR108 4.6 16.0 1.0
C B:LYS110 4.6 7.5 1.0
OG1 A:THR79 4.7 15.5 1.0
N A:THR79 4.7 10.1 1.0
O A:VAL80 4.8 15.4 1.0
CE B:LYS110 4.8 20.7 1.0
C A:THR78 4.8 9.0 1.0
O A:HOH480 4.9 14.2 1.0
C A:VAL80 4.9 11.0 1.0
O B:LYS110 4.9 8.9 1.0

Reference:

K.Reiter, D.Mukhopadhyay, H.Zhang, L.E.Boucher, N.Kumar, J.Bosch, M.J.Matunis. Identification of Biochemically Distinct Properties of the Small Ubiquitin-Related Modifier (Sumo) Conjugation Pathway in Plasmodium Falciparum. J.Biol.Chem. V. 288 27724 2013.
ISSN: ISSN 0021-9258
PubMed: 23943616
DOI: 10.1074/JBC.M113.498410
Page generated: Tue Dec 15 06:53:03 2020

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