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Sodium in PDB 4m0w: Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin

Enzymatic activity of Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin

All present enzymatic activity of Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin:
3.4.19.12; 3.4.22.69;

Protein crystallography data

The structure of Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin, PDB code: 4m0w was solved by C.-Y.Chou, H.-Y.Chen, H.-Y.Lai, S.-C.Cheng, Y.-W.Chou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.464, 68.309, 68.421, 90.00, 95.66, 90.00
R / Rfree (%) 15.6 / 18

Other elements in 4m0w:

The structure of Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin (pdb code 4m0w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin, PDB code: 4m0w:

Sodium binding site 1 out of 1 in 4m0w

Go back to Sodium Binding Sites List in 4m0w
Sodium binding site 1 out of 1 in the Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Sars-Cov Papain-Like Protease C112S Mutant in Complex with Ubiquitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:17.7
occ:1.00
 O A:SER112 2.7 11.3 1.0
O A:HOH702 2.8 13.2 1.0
OG A:SER116 2.8 11.8 1.0
O A:TYR274 2.9 11.5 1.0
OG A:SER115 2.9 16.0 0.5
C A:TYR274 3.5 10.9 1.0
N A:SER116 3.6 10.2 1.0
C A:SER112 3.6 11.1 1.0
CB A:SER116 3.7 10.8 1.0
CB A:TYR274 3.7 10.2 1.0
CA A:THR275 3.8 9.9 1.0
CB A:SER112 3.9 13.3 1.0
CB A:SER115 3.9 9.4 0.5
CA A:SER112 3.9 11.5 1.0
N A:THR275 4.0 10.1 1.0
CA A:SER116 4.0 10.4 1.0
CB A:SER115 4.1 13.1 0.5
C A:THR275 4.2 10.0 1.0
C A:SER115 4.3 10.6 1.0
CA A:TYR274 4.3 10.1 1.0
N A:HIS276 4.3 10.6 1.0
OG A:SER112 4.4 13.9 1.0
OG A:SER115 4.4 7.6 0.5
O A:ILE286 4.5 12.2 1.0
CA A:SER115 4.6 10.2 0.5
CA A:SER115 4.6 10.9 0.5
O A:HOH503 4.7 15.4 1.0
N A:TYR113 4.8 9.8 1.0
CB A:HIS276 4.9 12.0 1.0
O A:THR275 4.9 10.7 1.0
N A:SER115 5.0 10.0 1.0
N A:GLY288 5.0 11.9 1.0
N A:TYR274 5.0 11.0 1.0
CG A:TYR274 5.0 10.0 1.0

Reference:

C.-Y.Chou, H.-Y.Lai, H.-Y.Chen, S.-C.Cheng, K.-W.Cheng, Y.-W.Chou. Structural Basis For Catalysis and Ubiquitin Recognition By the Severe Acute Respiratory Syndrome Coronavirus Papain-Like Protease Acta Crystallogr.,Sect.D V. 70 572 2014.
ISSN: ISSN 0907-4449
PubMed: 24531491
DOI: 10.1107/S1399004713031040
Page generated: Mon Oct 7 16:54:43 2024

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