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Sodium in PDB 4ldl: Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody

Enzymatic activity of Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody

All present enzymatic activity of Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody:
3.2.1.17;

Protein crystallography data

The structure of Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody, PDB code: 4ldl was solved by A.M.Ring, A.Manglik, A.C.Kruse, M.D.Enos, W.I.Weis, K.C.Garcia, B.K.Kobilka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.27 / 3.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.670, 66.480, 303.100, 90.00, 90.00, 90.00
R / Rfree (%) 22.9 / 25.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody (pdb code 4ldl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody, PDB code: 4ldl:

Sodium binding site 1 out of 1 in 4ldl

Go back to Sodium Binding Sites List in 4ldl
Sodium binding site 1 out of 1 in the Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of BETA2 Adrenoceptor Bound to Hydroxybenzylisoproterenol and An Engineered Nanobody within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1402

b:96.7
occ:1.00
 O A:CYS1184 2.4 82.7 1.0
OD1 A:ASN1103 2.4 95.4 1.0
O A:HOH1501 2.4 47.2 1.0
O A:CYS1190 2.4 85.1 1.0
O A:GLU1187 2.4 87.4 1.0
CG A:ASN1103 3.3 95.4 1.0
C A:CYS1190 3.5 80.7 1.0
C A:CYS1184 3.5 74.6 1.0
O A:TYR1185 3.6 86.0 1.0
C A:GLU1187 3.6 80.1 1.0
CA A:TYR1185 3.8 72.5 1.0
C A:TYR1185 3.8 82.3 1.0
ND2 A:ASN1103 4.0 0.9 1.0
N A:TYR1185 4.1 71.6 1.0
CA A:CYS1190 4.2 76.9 1.0
CB A:CYS1190 4.2 71.8 1.0
N A:CYS1190 4.2 78.5 1.0
CB A:ASN1103 4.2 93.6 1.0
N A:GLU1187 4.4 71.8 1.0
CA A:GLU1187 4.5 71.5 1.0
N A:CYS1191 4.5 75.4 1.0
CA A:ASN1103 4.6 93.6 1.0
N A:GLU1188 4.6 79.1 1.0
SG A:CYS1184 4.6 0.4 1.0
CA A:GLU1188 4.6 75.3 1.0
CA A:CYS1184 4.7 67.7 1.0
C A:GLU1188 4.7 71.8 1.0
N A:ALA1186 4.8 87.2 1.0
CA A:CYS1191 4.8 70.2 1.0
CB A:GLU1187 4.9 71.0 1.0
C A:ALA1186 4.9 79.0 1.0
O A:GLU1188 4.9 71.8 1.0
SG A:CYS1106 5.0 57.3 1.0

Reference:

A.M.Ring, A.Manglik, A.C.Kruse, M.D.Enos, W.I.Weis, K.C.Garcia, B.K.Kobilka. Adrenaline-Activated Structure of Beta 2-Adrenoceptor Stabilized By An Engineered Nanobody. Nature V. 502 575 2013.
ISSN: ISSN 0028-0836
PubMed: 24056936
DOI: 10.1038/NATURE12572
Page generated: Mon Oct 7 16:44:04 2024

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