Sodium in PDB 4ld7: Crystal Structure of Anapt From Neosartorya Fischeri
Enzymatic activity of Crystal Structure of Anapt From Neosartorya Fischeri
All present enzymatic activity of Crystal Structure of Anapt From Neosartorya Fischeri:
2.5.1.34;
Protein crystallography data
The structure of Crystal Structure of Anapt From Neosartorya Fischeri, PDB code: 4ld7
was solved by
G.Zocher,
T.Stehle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
39.95 /
2.83
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.550,
242.590,
145.320,
90.00,
89.99,
90.00
|
|
R / Rfree (%)
|
20.3 /
20.2
|
Sodium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Sodium atom in the Crystal Structure of Anapt From Neosartorya Fischeri
(pdb code 4ld7). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 16 binding sites of Sodium where determined in the
Crystal Structure of Anapt From Neosartorya Fischeri, PDB code: 4ld7:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Sodium binding site 1 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 1 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na502
b:51.5
occ:1.00
|
O
|
A:GLN408
|
2.7
|
44.4
|
1.0
|
|
O
|
A:LEU360
|
2.8
|
48.8
|
1.0
|
|
O
|
A:ARG363
|
2.8
|
55.9
|
1.0
|
|
O
|
A:THR405
|
2.9
|
51.5
|
1.0
|
|
OD1
|
A:ASP365
|
3.1
|
50.5
|
1.0
|
|
C
|
A:THR405
|
3.5
|
51.9
|
1.0
|
|
C
|
A:GLN408
|
3.8
|
42.7
|
1.0
|
|
CB
|
A:LEU360
|
3.9
|
45.7
|
1.0
|
|
C
|
A:LEU360
|
3.9
|
48.5
|
1.0
|
|
C
|
A:ARG363
|
4.0
|
57.8
|
1.0
|
|
CG
|
A:ASP365
|
4.0
|
51.3
|
1.0
|
|
CA
|
A:THR405
|
4.1
|
54.2
|
1.0
|
|
CG
|
A:MET368
|
4.2
|
54.3
|
1.0
|
|
CB
|
A:GLN408
|
4.2
|
43.8
|
1.0
|
|
N
|
A:GLN408
|
4.3
|
43.7
|
1.0
|
|
CA
|
A:GLN408
|
4.3
|
42.8
|
1.0
|
|
N
|
A:THR406
|
4.4
|
50.1
|
1.0
|
|
CB
|
A:ARG363
|
4.4
|
58.2
|
1.0
|
|
N
|
A:ARG363
|
4.5
|
57.8
|
1.0
|
|
OD2
|
A:ASP365
|
4.5
|
51.4
|
1.0
|
|
CA
|
A:ARG363
|
4.5
|
58.6
|
1.0
|
|
CA
|
A:LEU360
|
4.5
|
46.9
|
1.0
|
|
CA
|
A:ASP365
|
4.7
|
54.1
|
1.0
|
|
CB
|
A:THR405
|
4.7
|
55.9
|
1.0
|
|
N
|
A:ASP365
|
4.7
|
55.7
|
1.0
|
|
CB
|
A:MET368
|
4.8
|
52.9
|
1.0
|
|
C
|
A:ASN364
|
4.8
|
57.0
|
1.0
|
|
CD1
|
A:LEU360
|
4.9
|
44.3
|
1.0
|
|
NE2
|
A:GLN408
|
4.9
|
46.2
|
1.0
|
|
CA
|
A:THR406
|
4.9
|
47.6
|
1.0
|
|
CB
|
A:ASP365
|
5.0
|
53.0
|
1.0
|
|
O
|
A:ASN364
|
5.0
|
57.2
|
1.0
|
|
N
|
A:ARG409
|
5.0
|
40.8
|
1.0
|
|
Sodium binding site 2 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 2 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na502
b:60.6
occ:1.00
|
O
|
B:GLN408
|
2.8
|
51.3
|
1.0
|
|
O
|
B:ARG363
|
2.9
|
64.5
|
1.0
|
|
O
|
B:LEU360
|
2.9
|
53.8
|
1.0
|
|
OD1
|
B:ASP365
|
3.0
|
59.3
|
1.0
|
|
O
|
B:THR405
|
3.1
|
55.2
|
1.0
|
|
C
|
B:THR405
|
3.7
|
55.9
|
1.0
|
|
C
|
B:GLN408
|
3.8
|
49.4
|
1.0
|
|
CG
|
B:ASP365
|
3.9
|
60.4
|
1.0
|
|
CB
|
B:LEU360
|
3.9
|
49.7
|
1.0
|
|
C
|
B:ARG363
|
4.0
|
66.5
|
1.0
|
|
CG
|
B:MET368
|
4.0
|
64.2
|
1.0
|
|
C
|
B:LEU360
|
4.1
|
53.1
|
1.0
|
|
CB
|
B:GLN408
|
4.1
|
49.7
|
1.0
|
|
CA
|
B:THR405
|
4.2
|
58.4
|
1.0
|
|
N
|
B:GLN408
|
4.3
|
49.3
|
1.0
|
|
CA
|
B:GLN408
|
4.3
|
48.6
|
1.0
|
|
OD2
|
B:ASP365
|
4.4
|
59.8
|
1.0
|
|
CB
|
B:ARG363
|
4.5
|
68.0
|
1.0
|
|
CA
|
B:ASP365
|
4.5
|
62.8
|
1.0
|
|
N
|
B:THR406
|
4.5
|
54.8
|
1.0
|
|
CA
|
B:ARG363
|
4.6
|
67.5
|
1.0
|
|
CB
|
B:MET368
|
4.6
|
62.3
|
1.0
|
|
N
|
B:ASP365
|
4.6
|
65.1
|
1.0
|
|
CA
|
B:LEU360
|
4.6
|
51.4
|
1.0
|
|
N
|
B:ARG363
|
4.6
|
65.6
|
1.0
|
|
NE2
|
B:GLN408
|
4.6
|
52.0
|
1.0
|
|
C
|
B:ASN364
|
4.7
|
66.7
|
1.0
|
|
CD1
|
B:LEU360
|
4.8
|
47.9
|
1.0
|
|
O
|
B:ASN364
|
4.8
|
66.6
|
1.0
|
|
CB
|
B:ASP365
|
4.8
|
61.4
|
1.0
|
|
CB
|
B:THR405
|
4.9
|
60.7
|
1.0
|
|
CG
|
B:LEU360
|
5.0
|
48.6
|
1.0
|
|
Sodium binding site 3 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 3 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na502
b:49.1
occ:1.00
|
O
|
C:GLN408
|
2.7
|
45.3
|
1.0
|
|
O
|
C:ARG363
|
2.9
|
59.0
|
1.0
|
|
O
|
C:LEU360
|
2.9
|
52.9
|
1.0
|
|
OD1
|
C:ASP365
|
3.0
|
53.1
|
1.0
|
|
O
|
C:THR405
|
3.1
|
51.1
|
1.0
|
|
C
|
C:THR405
|
3.7
|
51.5
|
1.0
|
|
C
|
C:GLN408
|
3.8
|
43.5
|
1.0
|
|
CB
|
C:LEU360
|
3.9
|
50.6
|
1.0
|
|
CG
|
C:ASP365
|
3.9
|
53.8
|
1.0
|
|
CG
|
C:MET368
|
4.0
|
55.7
|
1.0
|
|
C
|
C:ARG363
|
4.0
|
61.3
|
1.0
|
|
CB
|
C:GLN408
|
4.0
|
45.2
|
1.0
|
|
C
|
C:LEU360
|
4.0
|
52.5
|
1.0
|
|
CA
|
C:THR405
|
4.2
|
54.1
|
1.0
|
|
N
|
C:GLN408
|
4.2
|
44.6
|
1.0
|
|
CA
|
C:GLN408
|
4.2
|
43.8
|
1.0
|
|
OD2
|
C:ASP365
|
4.4
|
52.7
|
1.0
|
|
CA
|
C:ASP365
|
4.5
|
57.5
|
1.0
|
|
CB
|
C:ARG363
|
4.5
|
62.6
|
1.0
|
|
N
|
C:THR406
|
4.5
|
49.8
|
1.0
|
|
CA
|
C:LEU360
|
4.6
|
51.6
|
1.0
|
|
CA
|
C:ARG363
|
4.6
|
62.2
|
1.0
|
|
CB
|
C:MET368
|
4.6
|
54.9
|
1.0
|
|
N
|
C:ASP365
|
4.6
|
59.1
|
1.0
|
|
NE2
|
C:GLN408
|
4.6
|
47.9
|
1.0
|
|
N
|
C:ARG363
|
4.6
|
60.8
|
1.0
|
|
CD1
|
C:LEU360
|
4.8
|
49.6
|
1.0
|
|
C
|
C:ASN364
|
4.8
|
60.9
|
1.0
|
|
CB
|
C:ASP365
|
4.8
|
55.8
|
1.0
|
|
O
|
C:ASN364
|
4.9
|
61.1
|
1.0
|
|
CB
|
C:THR405
|
4.9
|
55.5
|
1.0
|
|
N
|
C:ARG409
|
4.9
|
41.9
|
1.0
|
|
CG
|
C:LEU360
|
5.0
|
50.2
|
1.0
|
|
Sodium binding site 4 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 4 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na502
b:43.7
occ:1.00
|
O
|
D:GLN408
|
2.8
|
53.5
|
1.0
|
|
O
|
D:ARG363
|
2.8
|
69.8
|
1.0
|
|
OD1
|
D:ASP365
|
3.0
|
67.0
|
1.0
|
|
O
|
D:LEU360
|
3.0
|
58.7
|
1.0
|
|
O
|
D:THR405
|
3.1
|
62.1
|
1.0
|
|
C
|
D:THR405
|
3.7
|
62.9
|
1.0
|
|
C
|
D:GLN408
|
3.8
|
51.3
|
1.0
|
|
CG
|
D:ASP365
|
3.8
|
67.5
|
1.0
|
|
CB
|
D:LEU360
|
3.9
|
55.1
|
1.0
|
|
C
|
D:ARG363
|
4.0
|
72.2
|
1.0
|
|
CG
|
D:MET368
|
4.0
|
71.2
|
1.0
|
|
CB
|
D:GLN408
|
4.1
|
52.2
|
1.0
|
|
C
|
D:LEU360
|
4.1
|
58.1
|
1.0
|
|
CA
|
D:THR405
|
4.1
|
66.2
|
1.0
|
|
N
|
D:GLN408
|
4.2
|
52.1
|
1.0
|
|
CA
|
D:GLN408
|
4.3
|
51.2
|
1.0
|
|
OD2
|
D:ASP365
|
4.4
|
67.0
|
1.0
|
|
CA
|
D:ASP365
|
4.5
|
70.2
|
1.0
|
|
CB
|
D:ARG363
|
4.5
|
71.5
|
1.0
|
|
N
|
D:THR406
|
4.5
|
60.7
|
1.0
|
|
CA
|
D:ARG363
|
4.6
|
72.1
|
1.0
|
|
N
|
D:ASP365
|
4.6
|
72.0
|
1.0
|
|
CB
|
D:MET368
|
4.6
|
68.7
|
1.0
|
|
N
|
D:ARG363
|
4.6
|
70.7
|
1.0
|
|
CA
|
D:LEU360
|
4.6
|
56.4
|
1.0
|
|
NE2
|
D:GLN408
|
4.6
|
55.9
|
1.0
|
|
C
|
D:ASN364
|
4.7
|
73.2
|
1.0
|
|
CB
|
D:ASP365
|
4.8
|
69.2
|
1.0
|
|
CD1
|
D:LEU360
|
4.8
|
53.6
|
1.0
|
|
O
|
D:ASN364
|
4.8
|
72.6
|
1.0
|
|
CB
|
D:THR405
|
4.8
|
67.7
|
1.0
|
|
Sodium binding site 5 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 5 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Na502
b:51.4
occ:1.00
|
O
|
E:GLN408
|
2.8
|
54.0
|
1.0
|
|
O
|
E:ARG363
|
2.8
|
63.9
|
1.0
|
|
O
|
E:LEU360
|
2.9
|
62.4
|
1.0
|
|
O
|
E:THR405
|
3.0
|
58.3
|
1.0
|
|
OD1
|
E:ASP365
|
3.0
|
57.4
|
1.0
|
|
C
|
E:THR405
|
3.6
|
59.0
|
1.0
|
|
C
|
E:GLN408
|
3.9
|
51.9
|
1.0
|
|
CB
|
E:LEU360
|
3.9
|
58.6
|
1.0
|
|
CG
|
E:ASP365
|
3.9
|
58.1
|
1.0
|
|
C
|
E:ARG363
|
3.9
|
65.6
|
1.0
|
|
C
|
E:LEU360
|
4.0
|
61.8
|
1.0
|
|
CG
|
E:MET368
|
4.1
|
62.0
|
1.0
|
|
CA
|
E:THR405
|
4.1
|
61.6
|
1.0
|
|
CB
|
E:GLN408
|
4.2
|
51.9
|
1.0
|
|
N
|
E:GLN408
|
4.3
|
51.9
|
1.0
|
|
CA
|
E:GLN408
|
4.3
|
51.2
|
1.0
|
|
CB
|
E:ARG363
|
4.4
|
66.3
|
1.0
|
|
OD2
|
E:ASP365
|
4.4
|
58.0
|
1.0
|
|
N
|
E:THR406
|
4.5
|
57.2
|
1.0
|
|
CA
|
E:ARG363
|
4.5
|
66.8
|
1.0
|
|
N
|
E:ARG363
|
4.5
|
66.8
|
1.0
|
|
CA
|
E:ASP365
|
4.5
|
60.4
|
1.0
|
|
CA
|
E:LEU360
|
4.6
|
60.1
|
1.0
|
|
N
|
E:ASP365
|
4.6
|
62.1
|
1.0
|
|
CB
|
E:MET368
|
4.7
|
60.3
|
1.0
|
|
NE2
|
E:GLN408
|
4.8
|
53.9
|
1.0
|
|
C
|
E:ASN364
|
4.8
|
63.4
|
1.0
|
|
CB
|
E:THR405
|
4.8
|
63.4
|
1.0
|
|
CD1
|
E:LEU360
|
4.8
|
56.7
|
1.0
|
|
CB
|
E:ASP365
|
4.9
|
59.5
|
1.0
|
|
O
|
E:ASN364
|
4.9
|
62.8
|
1.0
|
|
Sodium binding site 6 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 6 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Na502
b:92.5
occ:1.00
|
O
|
F:GLN408
|
2.7
|
58.5
|
1.0
|
|
O
|
F:ARG363
|
2.8
|
74.8
|
1.0
|
|
O
|
F:LEU360
|
2.9
|
67.9
|
1.0
|
|
OD1
|
F:ASP365
|
3.0
|
64.1
|
1.0
|
|
O
|
F:THR405
|
3.0
|
63.4
|
1.0
|
|
C
|
F:THR405
|
3.7
|
63.9
|
1.0
|
|
C
|
F:GLN408
|
3.8
|
56.7
|
1.0
|
|
CB
|
F:LEU360
|
3.9
|
64.4
|
1.0
|
|
CG
|
F:ASP365
|
3.9
|
65.6
|
1.0
|
|
C
|
F:ARG363
|
4.0
|
77.5
|
1.0
|
|
CG
|
F:MET368
|
4.0
|
70.9
|
1.0
|
|
C
|
F:LEU360
|
4.0
|
67.5
|
1.0
|
|
CB
|
F:GLN408
|
4.1
|
58.7
|
1.0
|
|
CA
|
F:THR405
|
4.1
|
66.8
|
1.0
|
|
N
|
F:GLN408
|
4.3
|
57.1
|
1.0
|
|
CA
|
F:GLN408
|
4.3
|
56.7
|
1.0
|
|
OD2
|
F:ASP365
|
4.4
|
64.7
|
1.0
|
|
CB
|
F:ARG363
|
4.5
|
79.2
|
1.0
|
|
CA
|
F:ASP365
|
4.5
|
70.3
|
1.0
|
|
N
|
F:THR406
|
4.5
|
62.2
|
1.0
|
|
CA
|
F:ARG363
|
4.5
|
78.8
|
1.0
|
|
CA
|
F:LEU360
|
4.6
|
65.7
|
1.0
|
|
N
|
F:ARG363
|
4.6
|
77.0
|
1.0
|
|
N
|
F:ASP365
|
4.6
|
72.7
|
1.0
|
|
CB
|
F:MET368
|
4.6
|
69.4
|
1.0
|
|
NE2
|
F:GLN408
|
4.7
|
62.7
|
1.0
|
|
C
|
F:ASN364
|
4.7
|
75.3
|
1.0
|
|
CD1
|
F:LEU360
|
4.8
|
63.1
|
1.0
|
|
CB
|
F:ASP365
|
4.8
|
68.2
|
1.0
|
|
O
|
F:ASN364
|
4.8
|
75.3
|
1.0
|
|
CB
|
F:THR405
|
4.8
|
68.6
|
1.0
|
|
N
|
F:ARG409
|
5.0
|
55.1
|
1.0
|
|
Sodium binding site 7 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 7 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Na502
b:39.6
occ:1.00
|
O
|
G:GLN408
|
2.7
|
50.2
|
1.0
|
|
O
|
G:LEU360
|
2.8
|
55.4
|
1.0
|
|
O
|
G:ARG363
|
2.9
|
61.5
|
1.0
|
|
O
|
G:THR405
|
2.9
|
56.7
|
1.0
|
|
OD1
|
G:ASP365
|
3.1
|
55.1
|
1.0
|
|
C
|
G:THR405
|
3.6
|
57.3
|
1.0
|
|
C
|
G:GLN408
|
3.8
|
48.4
|
1.0
|
|
CB
|
G:LEU360
|
3.9
|
51.4
|
1.0
|
|
C
|
G:LEU360
|
3.9
|
54.7
|
1.0
|
|
C
|
G:ARG363
|
4.0
|
63.6
|
1.0
|
|
CG
|
G:ASP365
|
4.0
|
55.8
|
1.0
|
|
CA
|
G:THR405
|
4.1
|
60.1
|
1.0
|
|
CG
|
G:MET368
|
4.1
|
58.0
|
1.0
|
|
CB
|
G:GLN408
|
4.2
|
48.8
|
1.0
|
|
N
|
G:GLN408
|
4.3
|
48.8
|
1.0
|
|
CA
|
G:GLN408
|
4.3
|
48.0
|
1.0
|
|
N
|
G:THR406
|
4.4
|
55.3
|
1.0
|
|
CB
|
G:ARG363
|
4.5
|
64.9
|
1.0
|
|
OD2
|
G:ASP365
|
4.5
|
55.3
|
1.0
|
|
N
|
G:ARG363
|
4.5
|
64.2
|
1.0
|
|
CA
|
G:ARG363
|
4.5
|
64.9
|
1.0
|
|
CA
|
G:LEU360
|
4.5
|
53.2
|
1.0
|
|
CA
|
G:ASP365
|
4.6
|
58.2
|
1.0
|
|
N
|
G:ASP365
|
4.7
|
60.6
|
1.0
|
|
CB
|
G:THR405
|
4.7
|
62.0
|
1.0
|
|
CB
|
G:MET368
|
4.8
|
56.1
|
1.0
|
|
C
|
G:ASN364
|
4.8
|
62.6
|
1.0
|
|
NE2
|
G:GLN408
|
4.8
|
50.8
|
1.0
|
|
CD1
|
G:LEU360
|
4.9
|
49.5
|
1.0
|
|
CB
|
G:ASP365
|
4.9
|
57.2
|
1.0
|
|
CA
|
G:THR406
|
4.9
|
52.5
|
1.0
|
|
O
|
G:ASN364
|
5.0
|
62.7
|
1.0
|
|
N
|
G:ARG409
|
5.0
|
47.4
|
1.0
|
|
Sodium binding site 8 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 8 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Na502
b:60.5
occ:1.00
|
O
|
H:GLN408
|
2.7
|
51.8
|
1.0
|
|
O
|
H:ARG363
|
2.8
|
65.9
|
1.0
|
|
O
|
H:LEU360
|
2.8
|
59.2
|
1.0
|
|
O
|
H:THR405
|
3.0
|
60.6
|
1.0
|
|
OD1
|
H:ASP365
|
3.1
|
57.5
|
1.0
|
|
C
|
H:THR405
|
3.6
|
61.4
|
1.0
|
|
C
|
H:GLN408
|
3.8
|
50.0
|
1.0
|
|
CB
|
H:LEU360
|
3.9
|
54.2
|
1.0
|
|
CG
|
H:ASP365
|
3.9
|
58.9
|
1.0
|
|
C
|
H:ARG363
|
3.9
|
68.6
|
1.0
|
|
C
|
H:LEU360
|
4.0
|
58.7
|
1.0
|
|
CG
|
H:MET368
|
4.1
|
65.0
|
1.0
|
|
CA
|
H:THR405
|
4.1
|
64.5
|
1.0
|
|
CB
|
H:GLN408
|
4.2
|
50.5
|
1.0
|
|
N
|
H:GLN408
|
4.3
|
50.4
|
1.0
|
|
CA
|
H:GLN408
|
4.3
|
49.5
|
1.0
|
|
CB
|
H:ARG363
|
4.4
|
69.7
|
1.0
|
|
N
|
H:THR406
|
4.5
|
59.7
|
1.0
|
|
OD2
|
H:ASP365
|
4.5
|
58.9
|
1.0
|
|
CA
|
H:ARG363
|
4.5
|
70.1
|
1.0
|
|
N
|
H:ARG363
|
4.5
|
69.3
|
1.0
|
|
CA
|
H:LEU360
|
4.5
|
56.4
|
1.0
|
|
CA
|
H:ASP365
|
4.6
|
62.1
|
1.0
|
|
N
|
H:ASP365
|
4.7
|
64.5
|
1.0
|
|
CB
|
H:MET368
|
4.7
|
62.6
|
1.0
|
|
CB
|
H:THR405
|
4.8
|
66.6
|
1.0
|
|
C
|
H:ASN364
|
4.8
|
66.4
|
1.0
|
|
NE2
|
H:GLN408
|
4.8
|
53.4
|
1.0
|
|
CD1
|
H:LEU360
|
4.8
|
51.8
|
1.0
|
|
CB
|
H:ASP365
|
4.9
|
60.7
|
1.0
|
|
O
|
H:ASN364
|
4.9
|
66.3
|
1.0
|
|
CA
|
H:THR406
|
5.0
|
57.3
|
1.0
|
|
N
|
H:ARG409
|
5.0
|
48.6
|
1.0
|
|
Sodium binding site 9 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 9 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Na502
b:0.9
occ:1.00
|
O
|
I:ARG363
|
2.8
|
0.1
|
1.0
|
|
O
|
I:GLN408
|
2.8
|
91.4
|
1.0
|
|
O
|
I:LEU360
|
2.9
|
96.4
|
1.0
|
|
OD1
|
I:ASP365
|
3.0
|
0.2
|
1.0
|
|
O
|
I:THR405
|
3.1
|
99.8
|
1.0
|
|
C
|
I:THR405
|
3.7
|
0.8
|
1.0
|
|
CB
|
I:LEU360
|
3.9
|
93.6
|
1.0
|
|
C
|
I:GLN408
|
3.9
|
89.5
|
1.0
|
|
C
|
I:ARG363
|
3.9
|
0.2
|
1.0
|
|
CG
|
I:ASP365
|
3.9
|
0.4
|
1.0
|
|
CG
|
I:MET368
|
4.0
|
0.2
|
1.0
|
|
C
|
I:LEU360
|
4.0
|
95.2
|
1.0
|
|
CB
|
I:GLN408
|
4.1
|
92.6
|
1.0
|
|
CA
|
I:THR405
|
4.2
|
0.3
|
1.0
|
|
N
|
I:GLN408
|
4.3
|
91.8
|
1.0
|
|
CA
|
I:GLN408
|
4.3
|
90.4
|
1.0
|
|
CB
|
I:ARG363
|
4.4
|
0.7
|
1.0
|
|
OD2
|
I:ASP365
|
4.5
|
0.8
|
1.0
|
|
CA
|
I:ARG363
|
4.5
|
0.0
|
1.0
|
|
CA
|
I:ASP365
|
4.5
|
0.7
|
1.0
|
|
N
|
I:ARG363
|
4.5
|
0.7
|
1.0
|
|
N
|
I:THR406
|
4.5
|
99.0
|
1.0
|
|
CA
|
I:LEU360
|
4.6
|
94.2
|
1.0
|
|
N
|
I:ASP365
|
4.6
|
0.1
|
1.0
|
|
CB
|
I:MET368
|
4.6
|
0.7
|
1.0
|
|
C
|
I:ASN364
|
4.7
|
0.2
|
1.0
|
|
NE2
|
I:GLN408
|
4.7
|
97.5
|
1.0
|
|
O
|
I:ASN364
|
4.8
|
0.2
|
1.0
|
|
CD1
|
I:LEU360
|
4.8
|
93.0
|
1.0
|
|
CB
|
I:THR405
|
4.8
|
0.5
|
1.0
|
|
CB
|
I:ASP365
|
4.8
|
0.1
|
1.0
|
|
N
|
I:ASN364
|
5.0
|
0.0
|
1.0
|
|
CG
|
I:LEU360
|
5.0
|
92.8
|
1.0
|
|
Sodium binding site 10 out
of 16 in 4ld7
Go back to
Sodium Binding Sites List in 4ld7
Sodium binding site 10 out
of 16 in the Crystal Structure of Anapt From Neosartorya Fischeri
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 10 of Crystal Structure of Anapt From Neosartorya Fischeri within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Na502
b:0.1
occ:1.00
|
O
|
J:GLN408
|
2.8
|
58.9
|
1.0
|
|
O
|
J:ARG363
|
2.8
|
65.2
|
1.0
|
|
O
|
J:LEU360
|
2.9
|
61.4
|
1.0
|
|
OD1
|
J:ASP365
|
3.0
|
57.6
|
1.0
|
|
O
|
J:THR405
|
3.1
|
60.1
|
1.0
|
|
C
|
J:THR405
|
3.7
|
60.5
|
1.0
|
|
CB
|
J:LEU360
|
3.9
|
58.8
|
1.0
|
|
C
|
J:GLN408
|
3.9
|
57.1
|
1.0
|
|
CG
|
J:ASP365
|
3.9
|
58.1
|
1.0
|
|
C
|
J:ARG363
|
3.9
|
67.2
|
1.0
|
|
CG
|
J:MET368
|
4.0
|
60.4
|
1.0
|
|
C
|
J:LEU360
|
4.0
|
60.9
|
1.0
|
|
CB
|
J:GLN408
|
4.1
|
58.2
|
1.0
|
|
CA
|
J:THR405
|
4.1
|
62.3
|
1.0
|
|
N
|
J:GLN408
|
4.3
|
56.8
|
1.0
|
|
CA
|
J:GLN408
|
4.3
|
56.9
|
1.0
|
|
CB
|
J:ARG363
|
4.4
|
70.2
|
1.0
|
|
OD2
|
J:ASP365
|
4.5
|
58.1
|
1.0
|
|
CA
|
J:ASP365
|
4.5
|
60.3
|
1.0
|
|
CA
|
J:ARG363
|
4.5
|
69.2
|
1.0
|
|
N
|
J:THR406
|
4.5
|
59.2
|
1.0
|
|
N
|
J:ARG363
|
4.5
|
68.7
|
1.0
|
|
CA
|
J:LEU360
|
4.6
|
59.7
|
1.0
|
|
N
|
J:ASP365
|
4.6
|
62.1
|
1.0
|
|
CB
|
J:MET368
|
4.6
|
59.5
|
1.0
|
|
NE2
|
J:GLN408
|
4.7
|
59.6
|
1.0
|
|
C
|
J:ASN364
|
4.7
|
64.2
|
1.0
|
|
O
|
J:ASN364
|
4.8
|
64.0
|
1.0
|
|
CD1
|
J:LEU360
|
4.8
|
58.0
|
1.0
|
|
CB
|
J:THR405
|
4.8
|
63.3
|
1.0
|
|
CB
|
J:ASP365
|
4.8
|
59.1
|
1.0
|
|
CG
|
J:LEU360
|
5.0
|
58.6
|
1.0
|
|
Reference:
X.Yu,
G.Zocher,
X.Xie,
M.Liebhold,
S.Schutz,
T.Stehle,
S.M.Li.
Catalytic Mechanism of Stereospecific Formation of Cis-Configured Prenylated Pyrroloindoline Diketopiperazines By Indole Prenyltransferases. Chem.Biol. V. 20 1492 2013.
ISSN: ISSN 1074-5521
PubMed: 24239009
DOI: 10.1016/J.CHEMBIOL.2013.10.007
Page generated: Tue Dec 15 06:51:42 2020
|
