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Sodium in PDB 4lci: Anti Canine CD28 Antibody, 1C6

Protein crystallography data

The structure of Anti Canine CD28 Antibody, 1C6, PDB code: 4lci was solved by M.M.Gewe, P.B.Rupert, R.K.Strong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.60 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.599, 71.621, 73.234, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 23

Sodium Binding Sites:

The binding sites of Sodium atom in the Anti Canine CD28 Antibody, 1C6 (pdb code 4lci). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Anti Canine CD28 Antibody, 1C6, PDB code: 4lci:

Sodium binding site 1 out of 1 in 4lci

Go back to Sodium Binding Sites List in 4lci
Sodium binding site 1 out of 1 in the Anti Canine CD28 Antibody, 1C6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Anti Canine CD28 Antibody, 1C6 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Na202

b:36.4
occ:1.00
O L:HOH347 2.2 39.8 1.0
O L:TYR95 2.3 25.6 1.0
O L:HOH327 2.3 25.2 1.0
O L:HOH328 2.4 37.3 1.0
O L:HOH379 2.7 56.2 1.0
O L:HOH321 2.7 41.5 1.0
C L:TYR95 3.5 25.5 1.0
O L:MET0 4.0 34.0 1.0
O L:HOH330 4.1 19.0 1.0
N L:MET0 4.2 50.2 1.0
CD L:PRO96 4.2 21.3 1.0
OE1 L:GLU94 4.2 28.7 1.0
N L:PRO96 4.3 20.5 1.0
C L:MET0 4.3 34.5 1.0
CB L:GLU94 4.5 27.6 1.0
N L:TYR95 4.5 26.6 1.0
CA L:TYR95 4.5 24.3 1.0
OD1 L:ASP1 4.7 35.2 1.0
O L:HOH355 4.8 34.8 1.0
CA L:MET0 4.9 44.9 1.0
N L:ASP1 4.9 31.3 1.0
C L:GLU94 4.9 25.1 1.0
CA L:ASP1 4.9 34.9 1.0

Reference:

M.M.Gewe, P.B.Rupert, R.K.Strong. Anti Canine CD28 Antibody, 1C6 To Be Published.
Page generated: Mon Oct 7 16:43:11 2024

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