Sodium in PDB 4lc9: Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein

All present enzymatic activity of Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein:
2.7.1.2;

The structure of Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein, PDB code: 4lc9 was solved by T.Beck, B.G.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.93 / 3.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	95.663, 105.312, 132.406, 90.00, 90.00, 90.00
R / Rfree (%)	24.4 / 29.2

The binding sites of Sodium atom in the Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein (pdb code 4lc9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein, PDB code: 4lc9:

Sodium binding site 1 out of 1 in the Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:34.7 occ:1.00 O B:VAL241 2.3 61.9 1.0 O B:GLY246 2.5 61.9 1.0 O B:MET238 2.6 58.7 1.0 OD1 B:ASP247 2.6 69.4 1.0 O B:VAL244 3.1 62.2 1.0 C B:VAL241 3.5 62.0 1.0 C B:GLY246 3.6 59.6 1.0 C B:MET238 3.8 57.6 1.0 CG B:ASP247 3.8 68.0 1.0 C B:VAL244 4.0 54.5 1.0 N B:GLY246 4.2 61.0 1.0 CA B:GLU242 4.3 61.8 1.0 N B:GLU242 4.3 58.4 1.0 CA B:GLN239 4.4 57.5 1.0 CA B:VAL241 4.4 55.8 1.0 CA B:ASP247 4.4 56.2 1.0 N B:ASP247 4.4 55.8 1.0 N B:VAL241 4.5 57.8 1.0 N B:GLN239 4.5 55.1 1.0 C B:GLN239 4.5 60.2 1.0 CB B:VAL244 4.6 51.6 1.0 O B:GLN239 4.6 64.8 1.0 CA B:GLY246 4.6 59.5 1.0 N B:VAL244 4.6 56.0 1.0 CB B:VAL241 4.6 54.0 1.0 CA B:VAL244 4.6 56.8 1.0 C B:GLU242 4.7 58.7 1.0 OD2 B:ASP247 4.7 78.5 1.0 CB B:ASP247 4.7 55.8 1.0 CA B:MET238 4.8 57.3 1.0 O B:GLU242 4.8 49.2 1.0

T.Beck, B.G.Miller. Structural Basis For Regulation of Human Glucokinase By Glucokinase Regulatory Protein. Biochemistry V. 52 6232 2013.
ISSN: ISSN 0006-2960
PubMed: 23957911
DOI: 10.1021/BI400838T