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Sodium in PDB 4l8p: Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution

Enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution

All present enzymatic activity of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution:
4.2.1.106;

Protein crystallography data

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution, PDB code: 4l8p was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.45 / 1.60
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 58.905, 58.905, 91.340, 90.00, 90.00, 120.00
R / Rfree (%) 15.1 / 18.1

Other elements in 4l8p:

The structure of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution (pdb code 4l8p). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution, PDB code: 4l8p:

Sodium binding site 1 out of 1 in 4l8p

Go back to Sodium Binding Sites List in 4l8p
Sodium binding site 1 out of 1 in the Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Bile-Acid 7-Alpha Dehydratase (CLOHIR_00079) From Clostridium Hiranonis Dsm 13275 at 1.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:23.6
occ:0.33
 O A:HOH350 2.6 30.2 1.0
OE1 A:GLU105 2.6 21.2 1.0
CD A:GLU105 3.3 27.7 1.0
OE2 A:GLU105 3.4 25.8 1.0
O A:HOH421 3.6 25.0 0.3
O A:HOH321 3.9 24.4 1.0
NI A:NI201 4.7 12.7 0.1
CE A:MSE84 4.8 19.8 1.0
CG A:GLU105 4.8 21.6 1.0
ND2 A:ASN107 4.9 28.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Oct 7 16:42:47 2024

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