Sodium in PDB 4l5r: Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna

The structure of Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna, PDB code: 4l5r was solved by Q.Yin, Y.Tian, H.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.57 / 1.87
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.347, 86.424, 51.412, 90.00, 113.34, 90.00
R / Rfree (%)	19.1 / 22.8

The binding sites of Sodium atom in the Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna (pdb code 4l5r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna, PDB code: 4l5r:

Sodium binding site 1 out of 1 in the Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of P202 HIN1 in Complex with 20-Mer Dsdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Na301 b:47.6 occ:1.00 O C:ASN81 2.8 32.7 1.0 O C:PHE99 2.8 32.0 1.0 OD1 C:ASN81 3.2 36.3 1.0 ND2 C:ASN50 3.4 56.5 1.0 OE2 C:GLU80 3.5 49.7 1.0 N C:ASN81 3.5 27.7 1.0 C C:ASN81 3.8 29.9 1.0 C C:PHE99 3.8 33.3 1.0 CB C:PHE99 4.0 26.9 1.0 CA C:PHE99 4.1 35.0 1.0 CA C:ASN81 4.1 27.4 1.0 CG C:ASN81 4.2 35.6 1.0 CB C:GLU80 4.2 40.1 1.0 O C:HOH507 4.3 42.2 1.0 O C:HOH467 4.3 53.2 1.0 C C:GLU80 4.5 37.8 1.0 CA C:GLU80 4.5 36.2 1.0 CD C:GLU80 4.6 54.8 1.0 CG C:ASN50 4.6 51.0 1.0 CD1 C:PHE99 4.7 25.1 1.0 CB C:ASN81 4.8 29.9 1.0 OH C:TYR75 4.8 32.4 1.0 CG C:PHE99 4.9 28.9 1.0 N C:MET82 4.9 28.2 1.0 CE1 C:TYR75 5.0 26.3 1.0 CG C:GLU80 5.0 46.0 1.0

Q.Yin, D.P.Sester, Y.Tian, Y.S.Hsiao, A.Lu, J.A.Cridland, V.Sagulenko, S.J.Thygesen, D.Choubey, V.Hornung, T.Walz, K.J.Stacey, H.Wu. Molecular Mechanism For P202-Mediated Specific Inhibition of AIM2 Inflammasome Activation. Cell Rep V. 4 327 2013.
ISSN: ESSN 2211-1247
PubMed: 23850291
DOI: 10.1016/J.CELREP.2013.06.024