Sodium in PDB 4jn7: Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site

The structure of Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site, PDB code: 4jn7 was solved by M.W.Vetting, F.Groninger-Poe, J.T.Bouvier, D.Wichelecki, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.52 / 1.15
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	131.008, 131.008, 102.232, 90.00, 90.00, 90.00
R / Rfree (%)	13.6 / 14.5

The structure of Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site (pdb code 4jn7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site, PDB code: 4jn7:

Sodium binding site 1 out of 1 in the Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L- Malate, Ordered Active Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:7.7 occ:1.00 OD2 A:ASP189 2.4 9.6 1.0 O A:HOH521 2.4 7.4 1.0 OE2 A:GLU216 2.4 7.9 1.0 OE1 A:GLU242 2.4 7.3 1.0 O4A A:LMR402 2.4 11.1 1.0 O A:HOH551 2.6 9.2 1.0 CG A:ASP189 3.3 6.8 1.0 CD A:GLU216 3.3 5.8 1.0 CD A:GLU242 3.4 7.8 1.0 O A:HOH981 3.4 22.7 0.5 HZ2 A:LYS149 3.4 7.6 1.0 HD2 A:HIS292 3.4 9.2 1.0 HE2 A:HIS292 3.5 9.0 1.0 C4 A:LMR402 3.6 13.4 1.0 OD1 A:ASP189 3.6 6.4 1.0 HZ1 A:LYS149 3.6 7.6 1.0 OE2 A:GLU242 3.6 8.5 1.0 HG2 A:GLU216 3.8 6.7 1.0 HD2 A:HIS191 3.8 13.4 1.0 O4B A:LMR402 3.9 20.7 1.0 NZ A:LYS149 3.9 6.3 1.0 CD2 A:HIS292 4.0 7.6 1.0 NE2 A:HIS292 4.0 7.5 1.0 CG A:GLU216 4.1 5.6 1.0 OE1 A:GLU216 4.1 7.3 1.0 O A:HOH981 4.2 23.6 0.5 O A:HOH514 4.3 7.6 1.0 OE1 A:GLU217 4.4 7.5 1.0 CD2 A:HIS191 4.5 11.2 1.0 HG3 A:GLU216 4.5 6.7 1.0 HE3 A:LYS149 4.5 8.2 1.0 HZ3 A:LYS149 4.6 7.6 1.0 CB A:ASP189 4.6 7.2 1.0 HB2 A:ASP189 4.6 8.6 1.0 HA A:HIS191 4.6 8.3 1.0 O A:HOH522 4.7 7.5 1.0 CG A:GLU242 4.7 6.7 1.0 HB3 A:GLU217 4.8 6.7 1.0 C3 A:LMR402 4.8 13.7 1.0 HE2 A:HIS191 4.8 14.8 1.0 HB3 A:GLU242 4.9 8.4 1.0 CE A:LYS149 4.9 6.8 1.0 HB2 A:GLU217 4.9 6.7 1.0 HG2 A:GLU242 4.9 8.1 1.0 H3A A:LMR402 4.9 16.4 1.0 H3 A:LMR402 4.9 16.4 1.0

M.W.Vetting, F.Groninger-Poe, J.T.Bouvier, D.Wichelecki, L.L.Morisco, S.R.Wasserman, S.Sojitra, E.Washington, A.Scott Glenn, S.Chowdhury, B.Evans, J.Hammonds, M.Stead, B.Hillerich, J.Love, R.D.Seidel, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi). Crystal Structure of An Enolase (Putative Galactarate Dehydratase, Target Efi-500740) From Agrobacterium Radiobacter, Bound Na and L-Malate, Ordered Active Site To Be Published.