Sodium in PDB 4jn6: Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37

Enzymatic activity of Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37

All present enzymatic activity of Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37:
1.2.1.10; 4.1.3.39;

Protein crystallography data

The structure of Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37, PDB code: 4jn6 was solved by J.Carere, S.E.Mckenna, M.S.Kimber, S.Y.K.Seah, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.89 / 1.93
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	69.690, 142.690, 148.170, 90.00, 95.08, 90.00
*R / R_free (%)*	17.4 / 20.6

Other elements in 4jn6:

The structure of Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37 also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37 (pdb code 4jn6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37, PDB code: 4jn6:

Sodium binding site 1 out of 1 in 4jn6

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Sodium Binding Sites List in 4jn6

Sodium binding site 1 out of 1 in the Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Aldolase-Dehydrogenase Complex From Mycobacterium Tuberculosis HRV37 within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
C:Na402 b:37.8 occ:1.00	ND1	C:HIS19	2.6	26.7	1.0
	O	C:HOH515	2.7	30.2	1.0
	O	C:HOH512	2.8	27.5	1.0
	NE2	C:HIS23	3.0	33.2	1.0
	NE2	C:HIS295	3.3	32.7	1.0
	CE1	C:HIS23	3.4	30.2	1.0
	CE1	C:HIS19	3.5	33.4	1.0
	O	C:TYR60	3.5	33.3	1.0
	CG	C:HIS19	3.7	30.3	1.0
	CD2	C:HIS295	3.8	28.9	1.0
	CA	C:HIS19	4.0	35.5	1.0
	CB	C:HIS19	4.0	29.8	1.0
	O	C:HOH520	4.1	31.1	1.0
	O	C:SER291	4.1	28.4	1.0
	CD2	C:HIS23	4.2	23.1	1.0
	OD2	C:ASP51	4.2	29.5	1.0
	CB	C:SER291	4.4	31.2	1.0
	CE1	C:HIS295	4.4	34.8	1.0
	C	C:TYR60	4.6	28.5	1.0
	O	C:HIS19	4.6	31.6	1.0
	NE2	C:HIS19	4.7	30.5	1.0
	ND1	C:HIS23	4.7	25.7	1.0
	O	C:HOH519	4.7	32.0	1.0
	C	C:HIS19	4.8	34.5	1.0
	CD2	C:HIS19	4.8	24.9	1.0
	OE2	C:GLU324	4.8	44.0	1.0
	OG	C:SER291	4.9	35.3	1.0
	CA	C:TYR60	5.0	32.4	1.0
	CB	C:TYR60	5.0	28.1	1.0
	C	C:SER291	5.0	30.6	1.0
	N	C:HIS19	5.0	31.2	1.0

Reference:

J.Carere, S.E.Mckenna, M.S.Kimber, S.Y.Seah. Characterization of An Aldolase-Dehydrogenase Complex From the Cholesterol Degradation Pathway of Mycobacterium Tuberculosis. Biochemistry V. 52 3502 2013.
ISSN: ISSN 0006-2960
PubMed: 23614353
DOI: 10.1021/BI400351H

Page generated: Mon Oct 7 16:19:58 2024

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