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Sodium in PDB 4jjd: Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4

Enzymatic activity of Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4

All present enzymatic activity of Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4, PDB code: 4jjd was solved by A.Camara-Artigas, J.M.Martin-Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.10 / 1.60
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 43.246, 51.715, 39.917, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 21.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4 (pdb code 4jjd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4, PDB code: 4jjd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4jjd

Go back to Sodium Binding Sites List in 4jjd
Sodium binding site 1 out of 2 in the Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:14.1
occ:1.00
OG A:SER121 2.3 21.8 1.0
O A:HOH305 2.3 22.3 1.0
O A:HOH307 2.4 23.7 1.0
H A:SER121 3.3 27.6 1.0
CB A:SER121 3.4 17.6 1.0
HB3 A:SER121 3.6 21.1 1.0
N A:SER121 3.8 23.0 1.0
O A:HOH320 3.9 29.5 1.0
CA A:SER121 4.0 22.8 1.0
OXT A:SER121 4.0 20.3 1.0
O A:HOH301 4.1 17.6 1.0
HB2 A:SER121 4.2 21.1 1.0
O A:VAL119 4.2 15.8 1.0
C A:SER121 4.3 18.0 1.0
HA A:ASN120 4.6 16.9 1.0
C A:ASN120 4.7 19.2 1.0
HA A:SER121 5.0 27.3 1.0

Sodium binding site 2 out of 2 in 4jjd

Go back to Sodium Binding Sites List in 4jjd
Sodium binding site 2 out of 2 in the Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the N114A Abl-SH3 Domain Mutant at PH4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:12.0
occ:0.60
O A:PRO118 2.3 11.6 1.0
OG1 A:THR117 2.4 12.2 1.0
O A:HOH328 2.4 15.5 0.8
HG23 A:THR117 2.9 11.2 1.0
HG21 A:THR117 3.2 11.2 1.0
HD2 A:PRO118 3.3 9.2 1.0
CG2 A:THR117 3.3 9.4 1.0
CB A:THR117 3.4 10.3 1.0
C A:PRO118 3.4 12.6 1.0
N A:PRO118 3.6 9.2 1.0
C A:THR117 3.9 8.8 1.0
CD A:PRO118 3.9 7.7 1.0
HB2 A:PRO118 3.9 10.4 1.0
CA A:PRO118 4.1 7.5 1.0
HB A:THR117 4.1 12.3 1.0
CA A:THR117 4.2 8.0 1.0
HG22 A:THR117 4.3 11.2 1.0
HA A:VAL119 4.4 7.3 1.0
O A:ASN120 4.4 21.9 1.0
CB A:PRO118 4.4 8.7 1.0
O A:THR117 4.4 8.1 1.0
HA A:THR117 4.5 9.6 1.0
N A:VAL119 4.5 9.8 1.0
HD3 A:PRO118 4.7 9.2 1.0
O A:VAL119 4.7 15.8 1.0
CG A:PRO118 4.7 16.0 1.0
C A:VAL119 4.8 11.5 1.0
CA A:VAL119 4.8 6.1 1.0
HG2 A:PRO118 4.8 19.2 1.0
HB3 A:SER121 4.9 21.1 1.0
HA A:PRO118 5.0 9.0 1.0

Reference:

A.Camara-Artigas, J.M.Martin-Garcia. Crystal Structure of the Abl-SH3 Domain at PH5 To Be Published.
Page generated: Tue Dec 15 06:46:48 2020

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