Sodium in PDB 4jhi: Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine

The structure of Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine, PDB code: 4jhi was solved by M.Ruszkowski, M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.90 / 2.60
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	96.086, 96.086, 113.584, 90.00, 90.00, 120.00
R / Rfree (%)	17 / 22.5

The binding sites of Sodium atom in the Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine (pdb code 4jhi). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine, PDB code: 4jhi:

Sodium binding site 1 out of 1 in the Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Medicago Truncatula Nodulin 13 (MTN13) in Complex with N6-Benzyladenine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:40.1 occ:1.00 O A:HOH314 2.4 38.4 1.0 O A:GLY61 2.5 34.8 1.0 O A:PHE59 2.6 29.2 1.0 N A:GLY61 3.5 30.6 1.0 C A:GLY61 3.6 31.4 1.0 C A:PHE59 3.8 30.4 1.0 CA A:GLY61 4.1 28.3 1.0 C A:VAL60 4.2 34.5 1.0 OE1 A:GLU40 4.2 60.3 1.0 OE2 A:GLU40 4.3 58.4 1.0 CA A:VAL60 4.4 35.2 1.0 CD A:GLU40 4.5 65.3 1.0 CG2 A:THR58 4.5 22.8 1.0 N A:VAL60 4.6 25.7 1.0 O A:GLY64 4.7 29.6 1.0 N A:ASP62 4.7 26.5 1.0 CA A:PHE59 4.9 24.3 1.0 N A:PHE59 4.9 26.5 1.0 N A:PHE63 5.0 34.2 1.0

M.Ruszkowski, K.Szpotkowski, M.Sikorski, M.Jaskolski. The Landscape of Cytokinin Binding By A Plant Nodulin. Acta Crystallogr.,Sect.D V. 69 2365 2013.
ISSN: ISSN 0907-4449
PubMed: 24311578
DOI: 10.1107/S0907444913021975