Sodium in PDB 4i05: Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni

All present enzymatic activity of Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni:
3.4.22.1;

The structure of Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni, PDB code: 4i05 was solved by P.Rezacova, A.Jilkova, J.Brynda, M.Horn, M.Mares, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.52 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	93.859, 50.988, 62.546, 90.00, 91.31, 90.00
R / Rfree (%)	16.3 / 21.6

The binding sites of Sodium atom in the Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni (pdb code 4i05). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni, PDB code: 4i05:

Sodium binding site 1 out of 1 in the Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:13.9 occ:1.00 O A:HOH508 3.1 15.8 1.0 O A:HOH517 3.1 27.0 1.0 O A:HOH516 3.1 24.7 1.0 NH1 A:ARG92 3.4 13.3 1.0 CA A:SER163 3.6 17.6 1.0 CD A:ARG92 3.7 13.1 1.0 N A:SER163 3.7 16.6 1.0 O A:SER162 3.9 15.7 1.0 C A:SER162 3.9 15.8 1.0 CE2 A:PHE103 3.9 13.2 1.0 CB A:TYR173 4.1 15.4 1.0 CB A:SER163 4.2 18.3 1.0 CZ A:ARG92 4.3 13.2 1.0 NE A:ARG92 4.4 13.1 1.0 CG A:ARG92 4.4 14.1 1.0 CZ A:PHE103 4.4 13.2 1.0 O A:HOH515 4.5 23.1 1.0 CB A:ARG92 4.5 13.6 1.0 CG A:TYR173 4.6 14.8 1.0 O A:GLY161 4.8 14.3 1.0 CB A:ALA127 4.9 13.3 1.0 CA A:SER162 4.9 15.4 1.0 C A:SER163 4.9 18.2 1.0 CD2 A:PHE103 4.9 12.6 1.0 CD2 A:TYR173 5.0 14.6 1.0 O A:HOH730 5.0 29.1 1.0

P.Rezacova, A.Jilkova, J.Brynda, M.Horn, M.Mares. Structure of Intermediate Processing Form of Cathepsin B1 From Schistosoma Mansoni To Be Published.