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Sodium in PDB 4hus: Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1

Protein crystallography data

The structure of Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1, PDB code: 4hus was solved by P.J.Stogios, G.Minasov, E.Evdokimova, Z.Wawrzak, V.Yim, M.Krishnamoorthy, R.Di Leo, P.Courvalin, A.Savchenko, W.F.Anderson, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.39 / 2.36
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 93.308, 184.735, 98.567, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 22.8

Other elements in 4hus:

The structure of Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1 also contains other interesting chemical elements:

Chlorine (Cl) 9 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1 (pdb code 4hus). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1, PDB code: 4hus:

Sodium binding site 1 out of 1 in 4hus

Go back to Sodium Binding Sites List in 4hus
Sodium binding site 1 out of 1 in the Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Streptogramin Group A Antibiotic Acetyltransferase Vata From Staphylococcus Aureus in Complex with Virginiamycin M1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na304

b:45.6
occ:1.00
O A:HOH422 2.3 37.9 1.0
O B:HOH417 2.4 32.2 1.0
O C:HOH514 2.5 40.5 1.0
O B:ASN164 2.5 36.7 1.0
O C:ASN164 2.5 34.3 1.0
O A:ASN164 2.6 33.3 1.0
C B:ASN164 3.3 37.2 1.0
C C:ASN164 3.4 34.5 1.0
C A:ASN164 3.4 31.5 1.0
CD C:PRO165 4.0 30.2 1.0
N B:PRO165 4.0 38.5 1.0
N C:PRO165 4.0 31.8 1.0
N C:ASN164 4.0 35.4 1.0
N B:ASN164 4.0 31.8 1.0
N A:PRO165 4.0 33.2 1.0
CD B:PRO165 4.0 37.0 1.0
CD A:PRO165 4.1 36.3 1.0
N A:ASN164 4.2 31.1 1.0
CA B:ASN164 4.3 35.1 1.0
CA C:ASN164 4.3 34.3 1.0
CA A:ASN164 4.4 29.3 1.0
O B:PRO165 4.6 39.2 1.0
O C:PRO165 4.7 34.9 1.0
O A:PRO165 4.8 33.9 1.0
CB C:ASN164 5.0 36.5 1.0

Reference:

P.J.Stogios, M.L.Kuhn, E.Evdokimova, P.Courvalin, W.F.Anderson, A.Savchenko. Potential For Reduction of Streptogramin A Resistance Revealed By Structural Analysis of Acetyltransferase Vata. Antimicrob.Agents Chemother. V. 58 7083 2014.
ISSN: ISSN 0066-4804
PubMed: 25223995
DOI: 10.1128/AAC.03743-14
Page generated: Tue Dec 15 06:43:52 2020

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