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Sodium in PDB 4htk: Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons

Enzymatic activity of Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons

All present enzymatic activity of Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons:
3.2.1.17;

Protein crystallography data

The structure of Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons, PDB code: 4htk was solved by N.E.C.Duke, Y.Z.Finfrock, E.A.Stern, R.W.Alkire, K.Lazarski, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.94 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.022, 79.022, 36.907, 90.00, 90.00, 90.00
R / Rfree (%) 13.4 / 15.2

Other elements in 4htk:

The structure of Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons (pdb code 4htk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons, PDB code: 4htk:

Sodium binding site 1 out of 1 in 4htk

Go back to Sodium Binding Sites List in 4htk
Sodium binding site 1 out of 1 in the Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometer Line Focusing; Total Dose 2.17 X 10E+12 X-Ray Photons within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na209

b:10.1
occ:1.00
 O A:SER60 2.4 9.7 1.0
O A:HOH320 2.5 13.3 1.0
O A:HOH304 2.5 8.2 1.0
O A:ARG73 2.5 12.2 1.0
O A:CYS64 2.5 7.4 1.0
OG A:SER72 2.6 13.6 1.0
CB A:SER72 3.3 13.4 1.0
C A:SER60 3.5 8.2 1.0
C A:ARG73 3.5 10.9 1.0
C A:CYS64 3.6 7.0 1.0
N A:ARG73 3.9 13.0 1.0
CA A:ASN65 3.9 7.1 1.0
CA A:SER60 4.1 7.2 1.0
C A:SER72 4.2 13.9 1.0
N A:ASN65 4.2 7.0 1.0
CB A:SER60 4.2 7.0 1.0
CA A:ARG73 4.3 11.9 1.0
CA A:SER72 4.4 13.9 1.0
N A:ASN74 4.4 11.0 1.0
O A:HOH423 4.5 30.2 1.0
N A:CYS64 4.5 7.3 1.0
O A:ARG61 4.5 12.0 1.0
C A:ARG61 4.5 11.0 1.0
N A:ARG61 4.5 9.5 1.0
CA A:ASN74 4.6 9.8 1.0
N A:ASP66 4.6 6.5 1.0
OD1 A:ASN65 4.7 10.1 1.0
CB A:THR69 4.7 8.2 1.0
CA A:CYS64 4.7 7.1 1.0
CL A:CL203 4.7 12.2 1.0
CB A:ASN74 4.8 9.9 1.0
CA A:ARG61 4.8 11.5 0.5
CB A:ASN65 4.8 8.5 1.0
O A:SER72 4.8 15.2 1.0
CA A:ARG61 4.8 11.9 0.6
C A:ASN65 4.8 6.3 1.0
N A:TRP62 4.9 9.7 1.0

Reference:

Y.Z.Finfrock, E.A.Stern, R.W.Alkire, J.J.Kas, K.Evans-Lutterodt, A.Stein, N.Duke, K.Lazarski, A.Joachimiak. Mitigation of X-Ray Damage in Macromolecular Crystallography By Submicrometre Line Focusing. Acta Crystallogr.,Sect.D V. 69 1463 2013.
ISSN: ISSN 0907-4449
PubMed: 23897469
DOI: 10.1107/S0907444913009335
Page generated: Mon Oct 7 15:53:41 2024

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