Sodium in PDB 4hsd: Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution

The structure of Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution, PDB code: 4hsd was solved by S.Kumar, A.Singh, A.Bhushan, S.Dey, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.70 / 2.45
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	80.481, 80.481, 69.177, 90.00, 90.00, 120.00
R / Rfree (%)	25.6 / 28.9

The binding sites of Sodium atom in the Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution (pdb code 4hsd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution, PDB code: 4hsd:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:6.7 occ:1.00 O A:ASP174 2.5 13.8 1.0 O A:ASP65 2.6 13.6 1.0 O A:ASP121 2.6 11.2 1.0 OD1 A:ASN7 2.6 18.8 1.0 O A:ASN7 2.7 26.2 1.0 O A:HOH442 3.1 38.2 1.0 C A:ASP121 3.5 10.5 1.0 C A:ASP174 3.6 15.8 1.0 C A:ASP65 3.7 12.0 1.0 CG A:ASN7 3.7 23.3 1.0 C A:ASN7 3.7 25.4 1.0 CA A:ASP121 4.0 11.0 1.0 CA A:ASN7 4.1 24.8 1.0 CA A:ASP174 4.1 17.2 1.0 CB A:ASP65 4.2 8.9 1.0 CA A:ASP65 4.3 11.9 1.0 CB A:ASN7 4.5 23.7 1.0 ND2 A:ASN7 4.6 22.8 1.0 N A:SER175 4.7 15.8 1.0 N A:ALA122 4.7 11.4 1.0 CB A:ASP121 4.7 10.8 1.0 O A:ILE120 4.7 8.2 1.0 N A:CYS66 4.8 10.8 1.0 O A:HOH499 4.9 17.1 1.0 CB A:ASP174 4.9 17.9 1.0 N A:ALA8 4.9 24.7 1.0 O A:MET173 5.0 20.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:6.9 occ:1.00 OD1 B:ASN7 2.5 12.9 1.0 O B:ASP65 2.6 11.8 1.0 O B:HOH475 2.7 19.8 1.0 O B:ASP121 2.8 8.9 1.0 O B:ASP174 3.0 18.7 1.0 O B:ASN7 3.1 13.8 1.0 C B:ASP121 3.5 10.3 1.0 CA B:ASP121 3.6 11.3 1.0 CG B:ASN7 3.7 11.5 1.0 C B:ASP65 3.8 11.3 1.0 C B:ASP174 4.0 18.7 1.0 C B:ASN7 4.1 13.1 1.0 CB B:ASP121 4.2 11.5 1.0 CA B:ASN7 4.4 12.8 1.0 CA B:ASP174 4.4 19.4 1.0 CB B:ASP65 4.4 10.5 1.0 O B:ILE120 4.5 14.2 1.0 CA B:ASP65 4.5 9.6 1.0 ND2 B:ASN7 4.6 14.0 1.0 CB B:ASN7 4.6 13.3 1.0 OD1 B:ASP121 4.7 14.3 1.0 O B:MET173 4.8 22.4 1.0 N B:ALA122 4.8 10.8 1.0 N B:ASP121 4.8 12.2 1.0 CG B:ASP121 4.9 12.7 1.0 N B:CYS66 4.9 12.5 1.0

S.Kumar, A.Singh, A.Bhushan, S.Dey, S.Sharma, T.P.Singh. Crystal Structure of A New Form of Plant Lectin From Cicer Arietinum at 2.45 Angstrom Resolution To Be Published.