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Sodium in PDB 4hry: The Structure of Arabidopsis Thaliana KAI2

Protein crystallography data

The structure of The Structure of Arabidopsis Thaliana KAI2, PDB code: 4hry was solved by R.Bythell-Douglas, M.T.Waters, A.Scaffidi, G.R.Flematti, S.M.Smith, C.S.Bond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 21.96 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.560, 66.260, 78.240, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 19.7

Other elements in 4hry:

The structure of The Structure of Arabidopsis Thaliana KAI2 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of Arabidopsis Thaliana KAI2 (pdb code 4hry). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Arabidopsis Thaliana KAI2, PDB code: 4hry:

Sodium binding site 1 out of 1 in 4hry

Go back to Sodium Binding Sites List in 4hry
Sodium binding site 1 out of 1 in the The Structure of Arabidopsis Thaliana KAI2


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Arabidopsis Thaliana KAI2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:18.0
occ:1.00
O A:HOH573 2.5 33.0 1.0
O A:CYS234 2.6 19.6 1.0
OG A:SER236 2.7 17.5 1.0
O A:HIS229 2.8 16.1 1.0
O A:LEU232 2.9 18.8 1.0
O A:HOH680 3.3 29.6 1.0
O A:HOH561 3.3 32.9 1.0
CB A:SER236 3.7 15.7 1.0
C A:LEU232 3.8 18.4 1.0
C A:CYS234 3.9 19.6 1.0
N A:SER236 3.9 14.8 1.0
C A:HIS229 3.9 16.0 1.0
CB A:LEU232 4.0 14.4 1.0
CA A:LEU232 4.3 15.1 1.0
ND1 A:HIS229 4.4 18.6 1.0
C A:GLU235 4.4 17.9 1.0
CA A:SER236 4.4 13.2 1.0
O A:HOH622 4.4 29.3 1.0
N A:LEU232 4.5 15.4 1.0
N A:CYS234 4.5 16.8 1.0
CA A:HIS229 4.5 13.1 1.0
CA A:GLU235 4.6 15.5 1.0
N A:GLU235 4.7 15.8 1.0
CE1 A:HIS229 4.7 19.3 1.0
CA A:CYS234 4.9 16.7 1.0
N A:GLY233 4.9 14.6 1.0
O A:LEU228 4.9 13.2 1.0
C A:GLY233 5.0 21.2 1.0
SG A:CYS234 5.0 20.2 1.0

Reference:

R.Bythell-Douglas, M.T.Waters, A.Scaffidi, G.R.Flematti, S.M.Smith, C.S.Bond. The Structure of the Karrikin-Insensitive Protein (KAI2) in Arabidopsis Thaliana Plos One V. 8 54758 2013.
ISSN: ESSN 1932-6203
PubMed: 23349965
DOI: 10.1371/JOURNAL.PONE.0054758
Page generated: Tue Dec 15 06:43:45 2020

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