Sodium in PDB 4hos: Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine

The structure of Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine, PDB code: 4hos was solved by Y.M.Abbas, A.Pichlmair, M.W.Gorna, G.Superti-Furga, B.Nagar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.79 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	54.475, 84.939, 60.928, 90.00, 106.75, 90.00
R / Rfree (%)	17.5 / 20.7

The binding sites of Sodium atom in the Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine (pdb code 4hos). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine, PDB code: 4hos:

Sodium binding site 1 out of 1 in the Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Full-Length Human IFIT5 with 5`-Triphosphate Oligouridine within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:12.8 occ:1.00 O1A X:UTP1 2.3 22.5 1.0 O X:HOH101 2.3 24.9 1.0 O2G X:UTP1 2.3 21.6 1.0 OE2 A:GLU33 2.4 26.2 1.0 O A:HOH612 2.4 23.8 1.0 O A:HOH655 2.5 41.0 1.0 O A:HOH613 2.8 30.8 1.0 CD A:GLU33 3.3 25.4 1.0 OE1 A:GLU33 3.5 25.8 1.0 PG X:UTP1 3.6 24.4 1.0 PA X:UTP1 3.7 24.3 1.0 O1G X:UTP1 4.0 21.5 1.0 NZ A:LYS150 4.1 22.6 1.0 O3B X:UTP1 4.1 22.0 1.0 O A:HOH726 4.2 26.0 1.0 OD2 A:ASP334 4.2 23.6 1.0 O X:HOH109 4.3 34.5 1.0 O2A X:UTP1 4.4 22.4 1.0 O3A X:UTP1 4.6 28.6 1.0 N3 X:U2 4.6 22.1 1.0 OG A:SER283 4.6 24.8 1.0 CG2 A:THR37 4.6 22.6 1.0 CG A:GLU33 4.7 21.9 1.0 O2 X:U2 4.7 24.8 1.0 O5' X:UTP1 4.7 23.8 1.0 PB X:UTP1 4.7 24.7 1.0 O3G X:UTP1 4.8 22.0 1.0 O1B X:UTP1 4.8 20.8 1.0 C5' X:UTP1 4.9 22.4 1.0 OG1 A:THR37 4.9 22.2 1.0 O X:HOH108 5.0 31.0 1.0

Y.M.Abbas, A.Pichlmair, M.W.Gorna, G.Superti-Furga, B.Nagar. Structural Basis For Viral 5'-Ppp-Rna Recognition By Human Ifit Proteins. Nature V. 494 60 2013.
ISSN: ISSN 0028-0836
PubMed: 23334420
DOI: 10.1038/NATURE11783