Sodium in PDB 4hkt: Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312)

All present enzymatic activity of Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312):
1.1.1.18;

The structure of Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312), PDB code: 4hkt was solved by P.Sampathkumar, S.C.Almo, New York Structural Genomics Researchconsortium (Nysgrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.00 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	90.449, 55.467, 149.091, 90.00, 97.56, 90.00
R / Rfree (%)	18.6 / 23.2

The binding sites of Sodium atom in the Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312) (pdb code 4hkt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312), PDB code: 4hkt:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na411 b:51.4 occ:1.00 O A:ASN24 2.1 39.3 1.0 O A:ALA27 2.2 42.6 1.0 O A:SER22 2.5 52.8 1.0 C A:ASN24 3.2 41.4 1.0 C A:ALA27 3.4 37.8 1.0 C A:SER22 3.5 50.8 1.0 O A:VAL21 3.7 38.9 1.0 N A:ASN24 3.9 37.9 1.0 N A:ALA27 4.0 38.1 1.0 N A:ALA25 4.1 43.2 1.0 CA A:ASN24 4.1 39.4 1.0 CA A:SER22 4.2 51.5 1.0 CA A:ALA25 4.2 44.8 1.0 CA A:ALA27 4.2 38.9 1.0 C A:ALA25 4.3 41.7 1.0 C A:GLY23 4.4 43.8 1.0 N A:ARG28 4.4 37.0 1.0 O A:HOH586 4.4 38.2 1.0 O A:ALA25 4.4 39.9 1.0 CA A:ARG28 4.5 37.6 1.0 N A:GLY23 4.5 48.8 1.0 C A:VAL21 4.7 40.5 1.0 N A:ASP26 4.8 38.7 1.0 CB A:ASN24 4.8 39.7 1.0 CB A:ALA27 4.8 37.8 1.0 CA A:GLY23 4.8 46.0 1.0 O A:GLY23 4.9 45.4 1.0 N A:SER22 4.9 45.2 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Putative Myo-Inositol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na410 b:64.3 occ:1.00 O B:ALA27 2.4 48.5 1.0 O B:ASN24 2.5 41.5 1.0 O B:SER22 2.5 54.4 1.0 O B:VAL21 3.1 42.6 1.0 C B:SER22 3.3 51.6 1.0 C B:ALA27 3.5 45.3 1.0 O B:HOH735 3.6 50.3 1.0 C B:ASN24 3.6 44.6 1.0 CA B:SER22 3.7 53.1 1.0 N B:ASN24 4.1 43.2 1.0 C B:VAL21 4.1 41.7 1.0 N B:SER22 4.4 43.9 1.0 N B:ARG28 4.4 43.9 1.0 CA B:ALA27 4.4 46.7 1.0 N B:GLY23 4.4 47.9 1.0 CA B:ASN24 4.4 41.3 1.0 N B:ALA27 4.4 44.5 1.0 CA B:ARG28 4.4 44.5 1.0 C B:GLY23 4.6 44.6 1.0 CB B:ALA27 4.6 49.0 1.0 N B:ALA25 4.7 48.6 1.0 CA B:ALA25 4.9 50.4 1.0 CA B:GLY23 5.0 45.5 1.0 CB B:SER22 5.0 56.0 1.0 C B:ALA25 5.0 48.9 1.0

P.Sampathkumar, A.Gizzi, M.Ahmed, N.Banu, R.Bhosle, J.Bonanno, S.Chamala, S.Chowdhury, A.Fiser, A.S.Glenn, J.Hammonds, B.Hillerich, K.Khafizov, J.Lafleur, J.D.Love, M.Stead, R.Seidel, R.Toro, S.C.Almo. Crystal Structure of A Putative Myo-Inositoldehydrogenase From Sinorhizobium Meliloti 1021 (Target Psi-012312) To Be Published.