Sodium in PDB 4h3l: Mplum-E16P

The structure of Mplum-E16P, PDB code: 4h3l was solved by M.M.Moore, R.A.Chica, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.87 / 1.65
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	61.229, 76.888, 95.801, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 22.7

The binding sites of Sodium atom in the Mplum-E16P (pdb code 4h3l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Mplum-E16P, PDB code: 4h3l:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Mplum-E16P


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Mplum-E16P within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:30.2 occ:1.00 NA A:NA301 0.0 30.2 1.0 NA A:NA301 0.1 30.3 0.0 O A:HOH602 3.3 36.0 1.0 OG A:SER222 3.6 47.1 1.0 NH1 A:ARG220 3.7 25.7 1.0 CE A:LYS194 4.2 37.4 1.0 NZ A:LYS194 4.2 36.8 1.0 O A:SER222 4.2 54.0 1.0 NH2 A:ARG220 4.4 33.0 1.0 CD A:LYS194 4.4 31.5 1.0 CB A:SER222 4.4 36.0 1.0 CA A:SER222 4.5 33.0 1.0 CG A:LYS194 4.5 30.1 1.0 CZ A:ARG220 4.5 26.2 1.0 C A:SER222 4.7 47.1 1.0 O A:HOH537 4.8 39.3 1.0

Sodium binding site 2 out of 2 in the Mplum-E16P


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Mplum-E16P within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:30.3 occ:0.00 NA A:NA301 0.0 30.3 0.0 NA A:NA301 0.1 30.2 1.0 O A:HOH602 3.4 36.0 1.0 OG A:SER222 3.5 47.1 1.0 NH1 A:ARG220 3.7 25.7 1.0 O A:SER222 4.1 54.0 1.0 CE A:LYS194 4.2 37.4 1.0 NZ A:LYS194 4.2 36.8 1.0 CB A:SER222 4.4 36.0 1.0 CA A:SER222 4.4 33.0 1.0 CD A:LYS194 4.5 31.5 1.0 NH2 A:ARG220 4.5 33.0 1.0 CG A:LYS194 4.5 30.1 1.0 CZ A:ARG220 4.6 26.2 1.0 C A:SER222 4.7 47.1 1.0 O A:HOH537 4.7 39.3 1.0

M.M.Moore, S.K.Oteng-Pabi, A.T.Pandelieva, S.L.Mayo, R.A.Chica. Recovery of Red Fluorescent Protein Chromophore Maturation Deficiency Through Rational Design. Plos One V. 7 52463 2012.
ISSN: ESSN 1932-6203
PubMed: 23285050
DOI: 10.1371/JOURNAL.PONE.0052463