Sodium in PDB 4h0c: Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053

The structure of Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053, PDB code: 4h0c was solved by C.Chang, J.Holowicki, S.Clancy, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.60 / 1.62
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	40.157, 40.251, 67.256, 72.77, 78.37, 76.09
R / Rfree (%)	13.6 / 19.4

The binding sites of Sodium atom in the Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053 (pdb code 4h0c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053, PDB code: 4h0c:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:34.4 occ:1.00 O A:HOH510 2.2 35.0 1.0 O A:HOH466 2.6 37.9 1.0 O A:ILE205 2.8 18.7 1.0 OXT A:LYS207 2.8 31.5 1.0 OH A:TYR100 3.3 21.3 1.0 C A:LEU206 3.6 24.6 1.0 CA A:LEU206 3.6 20.0 1.0 N A:LYS207 3.7 24.5 1.0 C A:ILE205 3.7 17.8 1.0 C A:LYS207 3.8 30.0 1.0 O A:HOH471 3.9 28.4 1.0 CE2 A:TYR100 3.9 14.1 1.0 CZ A:TYR100 4.0 16.1 1.0 O A:LEU206 4.0 28.3 1.0 O A:HOH496 4.1 42.1 1.0 N A:LEU206 4.1 18.0 1.0 NZ A:LYS20 4.2 34.5 1.0 CA A:LYS207 4.3 28.2 1.0 O A:THR204 4.7 19.3 1.0 O A:LYS207 4.8 32.6 1.0 CB A:LEU206 4.9 18.8 1.0 CB A:LYS207 5.0 29.6 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:29.1 occ:1.00 O B:GLN39 2.1 19.8 1.0 O B:HOH451 2.2 36.3 1.0 O B:HOH469 2.4 20.1 1.0 O B:HOH411 2.5 30.1 1.0 O B:LEU42 2.5 21.1 1.0 C B:GLN39 3.3 19.5 1.0 C B:LEU42 3.7 18.5 1.0 C B:LYS40 4.0 18.7 1.0 O B:HOH519 4.1 29.8 1.0 O B:LYS40 4.2 21.3 1.0 N B:LYS40 4.2 19.9 1.0 N B:LEU42 4.2 19.2 1.0 N B:LEU44 4.2 17.3 1.0 CA B:LYS40 4.2 19.6 1.0 OD1 B:ASP45 4.2 37.3 1.0 CA B:GLN39 4.2 18.0 1.0 N B:VAL41 4.3 19.2 1.0 O B:HOH511 4.4 40.2 1.0 N B:LYS43 4.5 18.4 1.0 CA B:LYS43 4.5 18.0 1.0 C B:VAL41 4.6 17.4 1.0 CA B:LEU42 4.6 17.4 1.0 O B:HOH473 4.7 24.9 1.0 CB B:GLN39 4.8 18.9 1.0 CA B:VAL41 4.8 19.5 1.0 C B:LYS43 4.9 18.0 1.0

C.Chang, J.Holowicki, S.Clancy, A.Joachimiak. Crystal Structure of Phospholipase/Carboxylesterase From Dyadobacter Fermentans Dsm 18053 To Be Published.