Sodium in PDB 4gyt: Crystal Structure of LPG0076 Protein From Legionella Pneumophila

The structure of Crystal Structure of LPG0076 Protein From Legionella Pneumophila, PDB code: 4gyt was solved by K.Michalska, X.Xu, H.Cui, A.Savchenko, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.79 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.847, 85.872, 103.845, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 21.3

The binding sites of Sodium atom in the Crystal Structure of LPG0076 Protein From Legionella Pneumophila (pdb code 4gyt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of LPG0076 Protein From Legionella Pneumophila, PDB code: 4gyt:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of LPG0076 Protein From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of LPG0076 Protein From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:38.2 occ:1.00 O A:PHE87 2.1 41.5 1.0 O A:GLN81 2.4 29.6 1.0 O A:ASN84 2.4 29.0 1.0 C A:PHE87 3.3 37.5 1.0 C A:ASN84 3.3 32.2 1.0 C A:GLN81 3.5 26.9 1.0 CA A:PHE85 3.8 32.2 1.0 N A:PHE85 3.9 29.9 1.0 N A:PHE87 4.0 32.5 1.0 C A:PHE85 4.1 31.4 1.0 CA A:PHE87 4.1 32.2 1.0 CA A:GLN81 4.1 26.9 1.0 N A:PHE89 4.3 28.4 1.0 N A:ASN84 4.3 27.1 1.0 N A:GLU88 4.3 31.4 1.0 O A:HOH308 4.4 38.9 1.0 O A:PHE85 4.4 32.1 1.0 CB A:PHE87 4.4 34.1 1.0 O A:HOH330 4.4 41.6 1.0 O A:HOH351 4.4 40.0 1.0 CA A:ASN84 4.4 27.7 1.0 CA A:GLU88 4.5 33.2 1.0 N A:MET82 4.5 27.8 1.0 C A:GLU88 4.6 29.6 1.0 N A:ASP86 4.7 35.2 1.0 CA A:MET82 4.7 30.1 1.0 O A:GLN80 4.8 28.9 1.0 C A:MET82 4.8 28.0 1.0 CD1 A:PHE85 4.8 43.5 1.0 CB A:GLN81 4.8 26.4 1.0 CB A:PHE89 4.8 23.9 1.0 CD2 A:LEU173 4.9 35.5 1.0 O A:MET82 5.0 29.4 1.0 CA A:PHE89 5.0 24.7 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of LPG0076 Protein From Legionella Pneumophila


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of LPG0076 Protein From Legionella Pneumophila within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:41.9 occ:1.00 O B:GLN81 2.2 29.9 1.0 O B:PHE87 2.3 52.6 1.0 O B:ASN84 2.4 31.2 1.0 C B:GLN81 3.3 28.4 1.0 C B:ASN84 3.4 31.1 1.0 C B:PHE87 3.4 44.9 1.0 CA B:PHE85 3.9 38.0 1.0 N B:PHE85 4.0 32.4 1.0 CA B:GLN81 4.0 28.8 1.0 N B:PHE87 4.2 35.6 1.0 CA B:PHE87 4.2 41.6 1.0 C B:PHE85 4.3 37.6 1.0 N B:ASN84 4.3 27.8 1.0 N B:PHE89 4.3 34.2 1.0 N B:MET82 4.4 26.2 1.0 CB B:PHE87 4.4 34.1 1.0 CA B:ASN84 4.4 29.9 1.0 N B:GLU88 4.4 40.9 1.0 O B:HOH309 4.5 31.3 1.0 O B:PHE85 4.5 40.0 1.0 C B:GLU88 4.5 33.8 1.0 CA B:MET82 4.6 24.7 1.0 CA B:GLU88 4.6 41.2 1.0 C B:MET82 4.6 24.8 1.0 CB B:GLN81 4.7 27.6 1.0 CD2 B:LEU173 4.7 38.1 1.0 O B:GLN80 4.7 26.9 1.0 CD1 B:PHE85 4.8 56.3 1.0 CB B:PHE89 4.8 28.5 1.0 O B:MET82 4.9 25.7 1.0 N B:ASP86 4.9 36.2 1.0 CA B:PHE89 4.9 30.1 1.0 N B:ASN83 5.0 24.4 1.0 CD1 B:LEU173 5.0 34.4 1.0

K.Michalska, X.Xu, H.Cui, A.Savchenko, A.Joachimiak. Crystal Structure of LPG0076 Protein From Legionella Pneumophila To Be Published.