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Sodium in PDB 4gyf: Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate

Enzymatic activity of Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate

All present enzymatic activity of Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate:
3.1.3.15;

Protein crystallography data

The structure of Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate, PDB code: 4gyf was solved by A.A.Fedorov, E.V.Fedorov, S.Ghodge, F.M.Raushel, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.83 / 1.65
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 85.661, 86.679, 45.080, 90.00, 90.00, 90.00
R / Rfree (%) 16 / 18.6

Other elements in 4gyf:

The structure of Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Chlorine (Cl) 6 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate (pdb code 4gyf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate, PDB code: 4gyf:

Sodium binding site 1 out of 1 in 4gyf

Go back to Sodium Binding Sites List in 4gyf
Sodium binding site 1 out of 1 in the Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L- Histidinol and Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na305

b:9.3
occ:1.00
 O A:SER18 2.4 9.5 1.0
O A:HIS13 2.4 9.6 1.0
O A:SER15 2.4 9.9 1.0
O A:HOH627 2.4 12.1 1.0
O A:HOH421 2.4 15.6 1.0
O A:HOH438 2.5 13.2 1.0
O A:HOH495 3.3 20.1 1.0
C A:HIS13 3.3 9.2 1.0
C A:SER15 3.5 9.2 1.0
C A:SER18 3.6 9.0 1.0
CA A:HIS13 3.6 8.2 1.0
N A:SER18 4.1 8.8 1.0
C A:ALA16 4.1 12.1 1.0
CA A:ALA16 4.2 13.5 1.0
O A:ALA16 4.2 12.5 1.0
CB A:HIS13 4.2 8.7 1.0
O A:HOH600 4.3 34.9 1.0
N A:ALA16 4.3 8.3 1.0
N A:SER15 4.3 7.6 1.0
OE2 A:GLU19 4.4 21.5 1.0
N A:PHE14 4.4 9.8 1.0
CA A:SER18 4.5 8.9 1.0
N A:GLU19 4.5 8.9 1.0
CG A:GLU19 4.5 10.9 1.0
O A:SER12 4.5 8.3 1.0
C A:PHE14 4.5 8.9 1.0
CA A:GLU19 4.6 9.5 1.0
CA A:SER15 4.6 7.8 1.0
O A:HOH455 4.6 17.9 1.0
N A:ASP17 4.7 9.9 1.0
N A:HIS13 4.9 7.2 1.0
CD A:GLU19 4.9 17.8 1.0
CA A:PHE14 4.9 10.8 1.0
O A:PHE14 5.0 10.6 1.0

Reference:

A.A.Fedorov, E.V.Fedorov, S.Ghodge, F.M.Raushel, S.C.Almo. Crystal Structure of Histidinol Phosphate Phosphatase (Hisk) From Lactococcus Lactis Subsp. Lactis IL1403 Complexed with Zn, L-Histidinol and Phosphate To Be Published.
Page generated: Mon Oct 7 15:41:57 2024

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