Sodium in PDB 4gyb: Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709

The structure of Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709, PDB code: 4gyb was solved by A.Gabdulkhakov, S.Tischenko, L.Yurevich, A.Lisov, A.Leontievsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.38 / 2.40
Space group	P 43 3 2
Cell size a, b, c (Å), α, β, γ (°)	177.540, 177.540, 177.540, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 17.7

The structure of Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709 also contains other interesting chemical elements:

Copper	(Cu)	4 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709 (pdb code 4gyb). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709, PDB code: 4gyb:

Sodium binding site 1 out of 1 in the Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na405 b:54.6 occ:1.00 O A:HOH654 2.6 43.7 1.0 O4 A:PGE409 2.6 53.3 1.0 O A:GLU80 2.7 38.2 1.0 O3 A:PGE409 2.8 47.7 1.0 O A:HOH653 2.8 57.0 1.0 O1 A:PGE409 2.9 57.4 1.0 O2 A:PGE409 3.0 42.5 1.0 C6 A:PGE409 3.5 55.6 1.0 C1 A:PGE409 3.5 45.5 1.0 NH2 A:ARG49 3.5 63.7 1.0 C5 A:PGE409 3.6 43.4 1.0 C A:GLU80 3.7 35.2 1.0 C2 A:PGE409 3.8 40.5 1.0 C3 A:PGE409 3.8 41.7 1.0 C4 A:PGE409 3.8 40.2 1.0 CB A:GLU80 4.1 35.0 1.0 CA A:GLU80 4.3 33.5 1.0 N A:GLU80 4.4 34.5 1.0 CG A:GLU80 4.6 36.9 1.0 CZ A:ARG49 4.7 69.0 1.0 N A:VAL81 4.8 34.7 1.0

A.Gabdulkhakov, S.Tischenko, L.Yurevich, A.Lisov, A.Leontievsky. Two-Domain Laccase From Streptomyces Lividans at 2.4 A Resolution AC1709 To Be Published.