Sodium in PDB 4fmt: Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution

The structure of Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution, PDB code: 4fmt was solved by Joint Center For Structural Genomics (Jcsg), L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	65.09 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.190, 94.320, 100.610, 90.00, 92.26, 90.00
R / Rfree (%)	18.4 / 21.4

The binding sites of Sodium atom in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution (pdb code 4fmt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 4 binding sites of Sodium where determined in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution, PDB code: 4fmt:
Jump to Sodium binding site number: 1; 2; 3; 4;

Sodium binding site 1 out of 4 in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:37.5 occ:1.00 O A:PHE105 2.3 42.9 1.0 O A:HOH408 2.3 38.0 1.0 O A:VAL108 2.4 38.4 1.0 O A:PRO110 2.5 35.1 1.0 C A:PHE105 3.4 42.9 1.0 C A:PRO110 3.5 38.2 1.0 C A:VAL108 3.6 41.3 1.0 O A:HOH447 3.7 55.6 1.0 O A:ARG109 3.9 41.5 1.0 C A:ARG109 4.0 42.6 1.0 CG2 A:THR111 4.1 34.9 1.0 O A:HOH451 4.2 54.4 1.0 N A:ALA106 4.2 40.7 1.0 CA A:THR111 4.2 34.7 1.0 N A:VAL108 4.3 41.5 1.0 CA A:PHE105 4.3 37.9 1.0 N A:THR111 4.3 35.6 1.0 CA A:ALA106 4.3 41.6 1.0 CB A:PHE105 4.3 37.6 1.0 O D:HOH417 4.3 41.9 1.0 O D:HOH409 4.3 37.5 1.0 N A:PRO110 4.4 37.5 1.0 C A:ALA106 4.4 47.1 1.0 O A:ALA106 4.4 47.6 1.0 N A:ARG109 4.4 40.1 1.0 CG2 A:VAL108 4.5 41.5 1.0 CA A:VAL108 4.5 39.7 1.0 CA A:ARG109 4.5 41.0 1.0 CA A:PRO110 4.6 36.3 1.0 CB A:THR111 4.8 40.8 1.0 N A:HIS107 4.9 44.8 1.0

Sodium binding site 2 out of 4 in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Na301 b:42.2 occ:1.00 O B:PHE105 2.3 38.3 1.0 O B:PRO110 2.4 33.8 1.0 O B:VAL108 2.5 39.5 1.0 O B:HOH415 2.6 39.4 1.0 O B:HOH461 2.8 59.9 1.0 O B:HOH433 3.0 48.1 1.0 C B:PHE105 3.5 38.6 1.0 C B:PRO110 3.5 36.8 1.0 C B:VAL108 3.7 40.7 1.0 O B:ARG109 3.9 42.2 1.0 C B:ARG109 4.0 42.1 1.0 N B:THR111 4.2 33.2 1.0 CA B:THR111 4.2 32.7 1.0 N B:PRO110 4.3 38.3 1.0 N B:ALA106 4.3 37.1 1.0 CA B:PHE105 4.4 33.3 1.0 N B:VAL108 4.4 39.0 1.0 CA B:ALA106 4.4 38.0 1.0 CB B:PHE105 4.4 33.7 1.0 CG2 B:THR111 4.4 35.6 1.0 CA B:PRO110 4.4 37.3 1.0 CG2 B:VAL108 4.5 39.0 1.0 N B:ARG109 4.5 38.8 1.0 C B:ALA106 4.5 43.8 1.0 CA B:VAL108 4.6 37.4 1.0 CA B:ARG109 4.6 39.0 1.0 O B:ALA106 4.6 44.7 1.0 O B:HOH403 4.6 33.2 1.0 CD2 B:PHE105 4.8 36.1 1.0 CB B:THR111 5.0 40.7 1.0

Sodium binding site 3 out of 4 in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na301 b:36.2 occ:1.00 O C:PHE105 2.2 35.8 1.0 O C:PRO110 2.4 38.9 1.0 O C:VAL108 2.5 40.3 1.0 C C:PHE105 3.4 36.4 1.0 C C:PRO110 3.5 40.3 1.0 C C:VAL108 3.6 41.8 1.0 O C:ARG109 3.9 42.8 1.0 C C:ARG109 4.0 43.3 1.0 CA C:PHE105 4.2 33.4 1.0 CB C:PHE105 4.2 33.2 1.0 N C:ALA106 4.2 34.3 1.0 N C:THR111 4.3 36.7 1.0 N C:PRO110 4.3 38.1 1.0 N C:VAL108 4.3 37.9 1.0 CA C:THR111 4.3 36.0 1.0 CG2 C:VAL108 4.3 37.2 1.0 CA C:ALA106 4.4 35.1 1.0 N C:ARG109 4.4 40.9 1.0 CA C:VAL108 4.5 36.7 1.0 CA C:PRO110 4.5 37.3 1.0 C C:ALA106 4.5 41.2 1.0 CA C:ARG109 4.5 41.3 1.0 O C:HOH402 4.6 32.9 1.0 CG2 C:THR111 4.6 31.9 1.0 O C:ALA106 4.6 41.6 1.0 CD2 C:PHE105 4.8 32.3 1.0 N C:HIS107 5.0 38.3 1.0

Sodium binding site 4 out of 4 in the Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Crystal Structure of A Chpt Protein (CC_3470) From Caulobacter Crescentus CB15 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:45.0 occ:1.00 O D:PHE105 2.3 44.6 1.0 O D:HOH463 2.3 55.8 1.0 O D:VAL108 2.3 51.0 1.0 O D:HOH413 2.4 40.3 1.0 O D:PRO110 2.6 49.4 1.0 C D:PHE105 3.4 45.0 1.0 C D:VAL108 3.5 51.0 1.0 C D:PRO110 3.7 49.8 1.0 O D:ARG109 3.8 53.2 1.0 C D:ARG109 3.9 53.3 1.0 N D:VAL108 4.3 46.7 1.0 N D:ALA106 4.3 42.4 1.0 N D:PRO110 4.3 49.2 1.0 N D:ARG109 4.3 48.8 1.0 CA D:PHE105 4.4 40.9 1.0 CA D:ALA106 4.4 43.6 1.0 C D:ALA106 4.4 50.8 1.0 CA D:ARG109 4.4 49.6 1.0 CG2 D:THR111 4.4 43.2 1.0 O D:ALA106 4.4 53.0 1.0 CA D:VAL108 4.4 45.6 1.0 N D:THR111 4.5 44.4 1.0 CA D:THR111 4.5 43.2 1.0 CB D:PHE105 4.5 40.7 1.0 CG2 D:VAL108 4.6 45.2 1.0 CA D:PRO110 4.6 48.5 1.0 O D:HOH469 4.7 63.7 1.0 O D:HOH428 4.8 46.5 1.0 N D:HIS107 4.9 47.9 1.0

J.A.Blair, Q.Xu, W.S.Childers, I.I.Mathews, J.W.Kern, M.Eckart, A.M.Deacon, L.Shapiro. Branched Signal Wiring of An Essential Bacterial Cell-Cycle Phosphotransfer Protein. Structure V. 21 1590 2013.
ISSN: ISSN 0969-2126
PubMed: 23932593
DOI: 10.1016/J.STR.2013.06.024