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Sodium in PDB 4fj4: Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50

Protein crystallography data

The structure of Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50, PDB code: 4fj4 was solved by A.Kuzin, Y.Chen, S.M.Vorobiev, J.Seetharaman, J.Janjua, R.Xiao, K.Cunningham, M.Maglaqui, L.A.Owens, H.Wang, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.84 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.812, 85.107, 113.485, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25.6

Other elements in 4fj4:

The structure of Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50 also contains other interesting chemical elements:

Mercury (Hg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50 (pdb code 4fj4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50, PDB code: 4fj4:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 4fj4

Go back to Sodium Binding Sites List in 4fj4
Sodium binding site 1 out of 2 in the Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:29.9
occ:1.00
C2 A:EMC201 2.8 15.2 0.2
O A:ASN156 2.9 22.6 1.0
N A:PHE158 3.4 25.7 1.0
CA A:PRO157 3.4 29.1 1.0
CE2 A:TYR155 3.6 18.2 1.0
C A:PRO157 3.6 32.6 1.0
CD1 A:PHE158 3.7 37.5 1.0
CE1 A:PHE158 3.7 42.7 1.0
C A:ASN156 3.8 23.9 1.0
CD2 A:TYR155 3.9 20.2 1.0
CD2 A:TYR133 4.0 22.2 1.0
C1 A:EMC201 4.0 15.2 0.2
N A:PRO157 4.0 22.4 1.0
CE2 A:TYR133 4.1 21.4 1.0
CG A:PHE158 4.1 42.0 1.0
O A:HOH312 4.2 23.5 1.0
CZ A:PHE158 4.3 49.0 1.0
CA A:PHE158 4.4 29.3 1.0
CD2 A:PHE158 4.6 50.3 1.0
CB A:PRO157 4.6 20.8 1.0
O A:PRO157 4.6 32.9 1.0
CE2 A:PHE158 4.6 53.1 1.0
CB A:PHE158 4.7 32.9 1.0
CZ A:TYR155 4.9 24.9 1.0

Sodium binding site 2 out of 2 in 4fj4

Go back to Sodium Binding Sites List in 4fj4
Sodium binding site 2 out of 2 in the Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of the Protein Q9HRE7 Complexed with Mercury From Halobacterium Salinarium at the Resolution 2.1A, Northeast Structural Genomics Consortium Target HSR50 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:34.1
occ:1.00
C2 B:EMC201 2.8 15.2 0.2
O B:ASN156 2.9 21.4 1.0
CE2 B:TYR155 3.5 21.6 1.0
CA B:PRO157 3.6 22.4 1.0
N B:PHE158 3.6 26.4 1.0
CD1 B:PHE158 3.7 37.0 1.0
CE1 B:PHE158 3.8 37.6 1.0
CD2 B:TYR155 3.8 23.0 1.0
C B:PRO157 3.8 27.6 1.0
C B:ASN156 3.9 28.3 1.0
CD2 B:TYR133 3.9 22.6 1.0
CE2 B:TYR133 4.1 21.7 1.0
N B:PRO157 4.2 24.0 1.0
C1 B:EMC201 4.2 15.2 0.2
CG B:PHE158 4.2 38.5 1.0
CZ B:PHE158 4.2 45.3 1.0
O B:HOH308 4.3 23.9 1.0
CA B:PHE158 4.5 26.1 1.0
CD2 B:PHE158 4.6 50.7 1.0
CE2 B:PHE158 4.7 50.2 1.0
O B:PRO157 4.8 24.1 1.0
CZ B:TYR155 4.8 23.2 1.0
CB B:PRO157 4.9 20.1 1.0
CB B:PHE158 4.9 31.9 1.0

Reference:

A.Kuzin, Y.Chen, S.M.Vorobiev, J.Seetharaman, J.Janjua, R.Xiao, K.Cunningham, M.Maglaqui, L.A.Owens, H.Wang, J.K.Everett, T.B.Acton, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target HSR50 To Be Published.
Page generated: Tue Dec 15 06:40:34 2020

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