Atomistry » Sodium » PDB 4f5r-4foi » 4ff7
Atomistry »
  Sodium »
    PDB 4f5r-4foi »
      4ff7 »

Sodium in PDB 4ff7: Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase

Enzymatic activity of Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase

All present enzymatic activity of Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase:
5.3.1.1;

Protein crystallography data

The structure of Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase, PDB code: 4ff7 was solved by A.Rodriguez-Romero, A.Hernandez-Santoyo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.49 / 1.86
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.923, 61.439, 160.236, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase (pdb code 4ff7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase, PDB code: 4ff7:

Sodium binding site 1 out of 1 in 4ff7

Go back to Sodium Binding Sites List in 4ff7
Sodium binding site 1 out of 1 in the Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of C126S Mutant of Saccharomyces Cerevisiae Triosephosphate Isomerase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na308

b:19.6
occ:1.00
O1 A:PGA301 2.3 32.4 1.0
O2 A:PGA301 2.5 16.9 1.0
C1 A:PGA301 2.6 22.8 1.0
OE2 A:GLU165 2.7 22.6 1.0
NE2 A:HIS95 3.0 10.9 1.0
ND2 A:ASN10 3.3 6.6 1.0
CD2 A:HIS95 3.5 12.3 1.0
CD2 A:LEU230 3.6 11.2 1.0
CG A:LEU230 3.6 10.0 1.0
CD A:GLU165 3.7 20.7 1.0
CB A:ASN10 3.8 7.3 1.0
OE1 A:GLU165 3.9 20.6 1.0
C2 A:PGA301 3.9 16.8 1.0
CG A:ASN10 4.0 9.5 1.0
CE A:LYS12 4.0 9.3 1.0
O A:LEU230 4.2 15.4 1.0
CE1 A:HIS95 4.2 12.0 1.0
NZ A:LYS12 4.5 9.2 1.0
CB A:LEU230 4.5 8.4 1.0
O A:VAL231 4.6 10.2 1.0
C A:LEU230 4.7 11.7 1.0
CD1 A:LEU230 4.7 8.5 1.0
CA A:GLY232 4.7 8.6 1.0
O1P A:PGA301 4.7 27.1 1.0
C A:VAL231 4.8 9.3 1.0
CG A:HIS95 4.8 9.7 1.0
N A:GLY232 4.8 10.4 1.0

Reference:

A.Hernandez-Santoyo, L.Dominguez-Ramirez, C.A.Reyes-Lopez, E.Gonzalez-Mondragon, A.Hernandez-Arana, A.Rodriguez-Romero. Effects of A Buried Cysteine-to-Serine Mutation on Yeast Triosephosphate Isomerase Structure and Stability. Int J Mol Sci V. 13 10010 2012.
ISSN: ESSN 1422-0067
PubMed: 22949845
DOI: 10.3390/IJMS130810010
Page generated: Tue Dec 15 06:40:31 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy