Sodium in PDB 4fe9: Crystal Structure of Susf From Bacteroides Thetaiotaomicron

The structure of Crystal Structure of Susf From Bacteroides Thetaiotaomicron, PDB code: 4fe9 was solved by N.M.Koropatkin, E.A.Cameron, E.C.Martens, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	188.694, 49.148, 83.618, 90.00, 97.36, 90.00
R / Rfree (%)	19.9 / 24.7

The binding sites of Sodium atom in the Crystal Structure of Susf From Bacteroides Thetaiotaomicron (pdb code 4fe9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Susf From Bacteroides Thetaiotaomicron, PDB code: 4fe9:

Sodium binding site 1 out of 1 in the Crystal Structure of Susf From Bacteroides Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Susf From Bacteroides Thetaiotaomicron within 5.0Å range: probe atom residue distance (Å) B Occ A:Na514 b:33.3 occ:1.00 O A:ALA398 2.2 26.6 1.0 OD2 A:ASP404 2.2 22.6 1.0 OG A:SER392 2.4 25.9 1.0 O A:GLY395 2.6 29.7 1.0 O A:TYR393 2.7 34.9 1.0 N A:TYR393 3.2 33.4 1.0 O A:HOH764 3.3 26.9 1.0 O A:HOH763 3.3 35.8 1.0 CG A:ASP404 3.3 26.8 1.0 C A:ALA398 3.4 26.4 1.0 C A:TYR393 3.4 34.4 1.0 CB A:SER392 3.5 30.6 1.0 CA A:TYR393 3.7 33.6 1.0 OD1 A:ASP404 3.8 33.0 1.0 C A:SER392 3.8 32.2 1.0 C A:GLY395 3.8 29.9 1.0 N A:GLY395 4.1 31.0 1.0 CA A:ALA398 4.2 27.9 1.0 CB A:ALA398 4.2 28.3 1.0 O A:SER392 4.3 32.8 1.0 N A:ALA398 4.3 28.6 1.0 CB A:TYR393 4.3 34.1 1.0 CA A:SER392 4.3 31.4 1.0 N A:GLN399 4.4 25.5 1.0 CA A:GLY395 4.4 30.4 1.0 CG2 A:VAL401 4.5 30.2 1.0 CA A:GLN399 4.6 25.0 1.0 C A:ASN394 4.6 32.4 1.0 CB A:ASP404 4.6 27.9 1.0 N A:ASN394 4.6 33.5 1.0 O A:GLY389 4.8 27.8 1.0 O A:LEU387 4.8 25.0 1.0 N A:TRP396 4.9 28.6 1.0

E.A.Cameron, M.A.Maynard, C.J.Smith, T.J.Smith, N.M.Koropatkin, E.C.Martens. Multidomain Carbohydrate-Binding Proteins Involved in Bacteroides Thetaiotaomicron Starch Metabolism. J.Biol.Chem. V. 287 34614 2012.
ISSN: ISSN 0021-9258
PubMed: 22910908
DOI: 10.1074/JBC.M112.397380