Sodium in PDB 4fe3: Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate

Enzymatic activity of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate

All present enzymatic activity of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate:
3.1.3.5;

Protein crystallography data

The structure of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate, PDB code: 4fe3 was solved by E.Bitto, C.A.Bingman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 1.74
*Space group*	P 4₃ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	46.878, 46.878, 287.101, 90.00, 90.00, 90.00
*R / R_free (%)*	16.9 / 21.8

Other elements in 4fe3:

The structure of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate (pdb code 4fe3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate, PDB code: 4fe3:

Sodium binding site 1 out of 1 in 4fe3

Go back to

Sodium Binding Sites List in 4fe3

Sodium binding site 1 out of 1 in the Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate

Mono view

Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Murine Cytosolic 5'-Nucleotidase III Complexed with Uridinine Monophosphate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Na303 b:31.7 occ:1.00	OE2	A:GLU173	2.3	22.8	1.0
	O	A:HOH598	2.7	44.0	1.0
	O	A:HOH554	2.9	30.6	1.0
	CD	A:GLU173	3.4	18.5	1.0
	CD	A:LYS132	3.5	41.2	1.0
	CG	A:GLN177	3.7	17.5	1.0
	OE1	A:GLU173	3.7	23.0	1.0
	CG	A:LYS132	3.8	32.6	1.0
	CD	A:ARG176	3.8	20.7	1.0
	NE2	A:GLN177	4.0	20.2	1.0
	CG	A:ARG176	4.0	23.4	1.0
	CD	A:GLN177	4.3	20.9	1.0
	O	A:HOH465	4.5	46.4	1.0
	CB	A:LYS132	4.6	26.0	1.0
	CE	A:LYS132	4.7	61.0	1.0
	CG	A:GLU173	4.7	23.2	1.0
	O	A:HOH588	4.8	34.9	1.0
	CB	A:ARG176	4.8	17.5	1.0
	N	A:GLN177	4.9	17.3	1.0
	CB	A:GLN177	5.0	16.7	1.0

Reference:

C.L.Grobosky, J.B.Lopez, S.Rennie, D.J.Skopelitis, A.T.Wiest, C.A.Bingman, E.Bitto. Structural Basis of Substrate Specificity and Selectivity of Murine Cytosolic 5'-Nucleotidase III. J.Mol.Biol. V. 423 540 2012.
ISSN: ISSN 0022-2836
PubMed: 22925580
DOI: 10.1016/J.JMB.2012.08.014

Page generated: Mon Oct 7 15:20:14 2024

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