Sodium in PDB 4fav: Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days

All present enzymatic activity of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days:
1.4.9.1; 1.4.99.3;

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days, PDB code: 4fav was solved by E.T.Yukl, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.49 / 2.08
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	55.530, 83.520, 107.780, 109.94, 91.54, 105.78
R / Rfree (%)	16.3 / 22.4

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days also contains other interesting chemical elements:

Iron	(Fe)	4 atoms
Calcium	(Ca)	2 atoms

The binding sites of Sodium atom in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days (pdb code 4fav). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days, PDB code: 4fav:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:44.1 occ:1.00 O B:HOH686 2.1 36.1 1.0 O B:LEU250 2.3 31.6 1.0 O B:ILE255 2.3 37.9 1.0 O B:ARG252 2.6 37.8 1.0 O B:HOH692 2.6 40.3 1.0 O B:HOH659 2.7 35.1 1.0 C B:LEU250 3.5 32.5 1.0 C B:ILE255 3.5 39.3 1.0 C B:ARG252 3.6 37.7 1.0 N B:ILE255 3.8 39.2 1.0 C B:ALA251 3.9 36.2 1.0 CA B:ILE255 4.0 38.6 1.0 N B:ARG252 4.0 35.2 1.0 O B:ALA251 4.1 37.6 1.0 CA B:ALA251 4.1 35.1 1.0 CB B:ILE255 4.2 37.8 1.0 CA B:PRO253 4.2 41.1 1.0 N B:ALA251 4.3 33.4 1.0 N B:GLY254 4.3 42.1 1.0 OE2 B:GLU256 4.3 58.7 1.0 N B:PRO253 4.3 39.8 1.0 CD1 B:LEU250 4.4 32.0 1.0 CA B:LEU250 4.4 31.2 1.0 C B:PRO253 4.5 41.9 1.0 CA B:ARG252 4.5 35.4 1.0 N B:GLU256 4.6 39.3 1.0 CG B:LEU250 4.7 32.4 1.0 C B:GLY254 4.7 41.3 1.0 CD B:GLU256 4.8 56.5 1.0 CA B:GLU256 4.9 42.1 1.0 O B:LEU249 4.9 31.1 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days within 5.0Å range: probe atom residue distance (Å) B Occ B:Na405 b:41.9 occ:1.00 O B:HOH654 2.3 29.7 1.0 OD1 B:ASN231 2.3 33.5 1.0 OG1 B:THR233 2.4 38.8 1.0 O B:HOH551 2.4 20.2 1.0 O B:HOH619 2.6 30.0 1.0 O B:HOH698 2.7 32.2 1.0 CG B:ASN231 3.2 33.4 1.0 ND2 B:ASN231 3.5 28.4 1.0 CB B:THR233 3.5 41.6 1.0 N B:THR233 3.8 38.6 1.0 CG2 B:THR233 3.9 42.4 1.0 CA B:THR233 4.1 39.0 1.0 N B:ALA234 4.4 35.6 1.0 O B:HOH578 4.5 28.4 1.0 CB B:ASN231 4.6 30.2 1.0 C B:THR233 4.7 38.0 1.0 O B:HOH681 4.8 26.1 1.0 C B:ASN231 4.8 32.6 1.0 N B:GLU232 4.8 34.6 1.0 CA B:ASN231 4.9 31.4 1.0

E.T.Yukl, F.Liu, J.Krzystek, S.Shin, L.M.Jensen, V.L.Davidson, C.M.Wilmot, A.Liu. Diradical Intermediate Within the Context of Tryptophan Tryptophylquinone Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 110 4569 2013.
ISSN: ISSN 0027-8424
PubMed: 23487750
DOI: 10.1073/PNAS.1215011110