Sodium in PDB 4ekf: Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution

All present enzymatic activity of Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution:
3.4.22.39;

The structure of Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution, PDB code: 4ekf was solved by M.L.Baniecki, W.J.Mcgrath, W.F.Mangel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 0.98
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.270, 54.540, 42.410, 90.00, 100.10, 90.00
R / Rfree (%)	13.5 / 16.8

The binding sites of Sodium atom in the Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution (pdb code 4ekf). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution, PDB code: 4ekf:

Sodium binding site 1 out of 1 in the Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Inactive Adenovirus Proteinase at 0.98 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:16.2 occ:1.00 O A:HOH1036 2.3 20.2 1.0 O A:ILE150 2.3 15.6 1.0 O A:MET147 2.4 10.3 1.0 O A:HOH1038 2.4 12.9 0.5 O A:HOH1069 2.5 32.4 1.0 HA A:ASN148 3.1 13.0 1.0 C A:MET147 3.4 9.5 1.0 C A:ILE150 3.4 12.0 1.0 H A:ILE150 3.5 12.8 1.0 HB3 A:MET147 3.6 11.9 1.0 HD21 A:ASN148 3.8 14.6 1.0 CA A:ASN148 3.9 10.8 1.0 HA A:THR151 3.9 14.0 1.0 N A:ASN148 4.0 9.8 1.0 OD1 A:ASP142 4.0 23.3 1.0 O A:HOH1096 4.1 22.7 0.5 N A:ILE150 4.2 10.6 1.0 CA A:ILE150 4.2 13.2 1.0 HA A:ASP142 4.3 15.5 1.0 CB A:ILE150 4.3 20.0 1.0 C A:ASN148 4.3 10.5 1.0 O A:HOH1182 4.3 37.1 1.0 CA A:MET147 4.3 9.0 1.0 CB A:MET147 4.4 9.9 1.0 N A:THR151 4.4 10.7 1.0 HE2 A:MET147 4.5 32.3 1.0 HA A:MET147 4.5 10.8 1.0 O A:ASN148 4.6 13.0 1.0 CA A:THR151 4.6 11.7 1.0 H A:GLY152 4.6 13.9 1.0 O A:HOH1209 4.6 35.1 1.0 HB2 A:MET147 4.6 11.9 1.0 ND2 A:ASN148 4.7 12.2 1.0 H A:ASN148 4.8 11.7 1.0 CG A:ASP142 4.9 21.8 1.0 N A:LEU149 4.9 10.1 1.0

M.L.Baniecki, W.J.Mcgrath, W.F.Mangel. Regulation of A Viral Proteinase By A Peptide and Dna in One-Dimensional Space: III. Atomic Resolution Structure of the Nascent Form of the Adenovirus Proteinase. J.Biol.Chem. V. 288 2081 2013.
ISSN: ISSN 0021-9258
PubMed: 23043139
DOI: 10.1074/JBC.M112.407429