Sodium in the structure of Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase II From Burkholderia Vietnamiensis (pdb 4ddo)

The binding sites of Sodium atom in the structure of Crystal Structure of 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase II From Burkholderia Vietnamiensis (pdb code 4ddo). This binding sites where shown with 5.0 Angstroms radius around Sodium atom. The 4ddo structure was solved by SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 50.0-1.9 Space group C2221 a (A) 56.820 b (A) 101.320 c (A) 131.180 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 14.8 Rfree (%) 19.3 Sodium Binding Sites: Sodium binding site 1 out of 1 in 4ddo Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Sodium in the PDB 4ddo. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Sodium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asn311, A: Ala312, A: His313, A: Lys344, A: Glu358, A: Ser404, A: Asn405, A: Gly406, A: Hoh618, A: Hoh631, A: Hoh634, conact list: Atom Atom Distance (A) Na O A:Asn311 2.86 Na CB A:Asn311 4.23 Na C A:Asn311 3.63 Na OD1 A:Asn311 2.83 Na CG A:Asn311 3.85 Na CA A:Asn311 4.54 Na O A:Ala312 3.13 Na N A:Ala312 4.29 Na C A:Ala312 3.54 Na CA A:Ala312 4.41 Na N A:His313 3.89 Na CA A:His313 4.13 Na NZ A:Lys344 4.50 Na OE1 A:Glu358 2.69 Na CB A:Glu358 3.45 Na OE2 A:Glu358 4.73 Na CD A:Glu358 3.59 Na CG A:Glu358 3.85 Na CA A:Glu358 4.85 Na CB A:Ser404 4.26 Na OG A:Ser404 3.03 Na C A:Ser404 4.30 Na CA A:Ser404 4.41 Na O A:Asn405 2.76 Na N A:Asn405 3.57 Na CB A:Asn405 4.80 Na C A:Asn405 3.81 Na CA A:Asn405 4.25 Na N A:Gly406 4.97 Na O A:Hoh618 3.94 Na O A:Hoh631 3.23 Na O A:Hoh634 3.77 interactive model: