Sodium in PDB 4d2e: Crystal Structure of An Integral Membrane Kinase - V2.3

All present enzymatic activity of Crystal Structure of An Integral Membrane Kinase - V2.3:
2.7.1.107;

The structure of Crystal Structure of An Integral Membrane Kinase - V2.3, PDB code: 4d2e was solved by D.Li, C.Boland, M.Caffrey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.021 / 2.28
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	75.290, 91.820, 143.920, 90.00, 90.00, 90.00
R / Rfree (%)	18.84 / 22.88

The structure of Crystal Structure of An Integral Membrane Kinase - V2.3 also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Sodium atom in the Crystal Structure of An Integral Membrane Kinase - V2.3 (pdb code 4d2e). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Integral Membrane Kinase - V2.3, PDB code: 4d2e:

Sodium binding site 1 out of 1 in the Crystal Structure of An Integral Membrane Kinase - V2.3


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Integral Membrane Kinase - V2.3 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na1122 b:65.6 occ:1.00 OD2 D:ASP107 2.3 78.1 1.0 O D:HOH2017 2.6 53.4 1.0 O D:HOH2016 3.0 31.3 1.0 O D:HOH2032 3.1 52.1 1.0 CG D:ASP107 3.5 71.1 1.0 CA D:SER61 3.6 32.4 0.8 CB D:SER61 3.7 31.1 0.8 CA D:SER61 3.7 33.2 0.2 CD2 D:LEU64 3.7 31.7 1.0 OG F:SER60 3.8 39.6 0.7 OG D:SER61 3.9 33.2 0.2 CB D:SER61 4.0 33.8 0.2 CB F:SER60 4.0 40.9 0.3 CB F:SER60 4.1 40.4 0.7 OD1 D:ASP107 4.2 71.2 1.0 O D:SER61 4.4 39.7 0.2 O D:SER61 4.4 43.3 0.8 CB D:ASP107 4.5 43.9 1.0 CB D:LEU64 4.5 30.7 1.0 N D:SER61 4.6 32.3 0.8 C D:SER61 4.6 34.9 0.8 C D:SER61 4.6 36.0 0.2 N D:SER61 4.6 33.2 0.2 CG D:LEU64 4.8 35.7 1.0 OG F:SER60 4.8 41.4 0.3 OG1 D:THR111 4.8 49.6 1.0 O D:SER60 4.9 37.9 1.0 CA F:SER60 5.0 44.5 0.3 CA F:SER60 5.0 45.2 0.7

C.Boland, D.Li, S.T.A.Shah, S.Haberstock, V.Dotsch, F.Bernhard, M.Caffrey. Cell-Free Expression and in Meso Crystallisation of An Integral Membrane Kinase For Structure Determination. Cell.Mol.Life Sci. 2014.
ISSN: ESSN 1420-9071
PubMed: 25012698
DOI: 10.1007/S00018-014-1655-7