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Sodium in PDB 4cnt: Crystal Structure of Wt Human Crmp-4

Protein crystallography data

The structure of Crystal Structure of Wt Human Crmp-4, PDB code: 4cnt was solved by R.Ponnusamy, B.Lohkamp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.97 / 2.65
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 86.370, 157.650, 86.380, 90.00, 113.03, 90.00
R / Rfree (%) 18.675 / 23.563

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Wt Human Crmp-4 (pdb code 4cnt). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Wt Human Crmp-4, PDB code: 4cnt:

Sodium binding site 1 out of 1 in 4cnt

Go back to Sodium Binding Sites List in 4cnt
Sodium binding site 1 out of 1 in the Crystal Structure of Wt Human Crmp-4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Wt Human Crmp-4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na1497

b:36.8
occ:1.00
O D:GLY464 2.0 38.2 1.0
O D:ASP128 2.5 46.8 1.0
O D:GLY466 2.5 44.8 1.0
C D:GLY464 3.1 41.9 1.0
C D:ASP128 3.4 50.7 1.0
CA D:ASP128 3.6 52.9 1.0
C D:GLY466 3.7 46.2 1.0
CA D:GLY464 3.8 42.1 1.0
C D:ALA465 4.1 42.8 1.0
N D:GLY466 4.1 42.4 1.0
CB D:ASP128 4.2 52.4 1.0
N D:ALA465 4.2 40.5 1.0
O D:ALA465 4.3 49.8 1.0
OD1 D:ASP128 4.4 52.6 1.0
CA D:GLY466 4.4 42.0 1.0
CA D:ALA465 4.5 41.3 1.0
N D:GLY129 4.6 48.4 1.0
CG D:ASP128 4.7 51.7 1.0
N D:ARG467 4.7 48.2 1.0
O D:ALA127 4.7 50.6 1.0
CA D:ARG467 4.9 48.1 1.0
N D:ASP128 4.9 50.9 1.0

Reference:

R.Ponnusamy, A.Lebedev, S.Pahlow, B.Lohkamp. Crystal Structure of Human Crmp-4: Correction of Intensities For Lattice-Translocation Disorder Acta Crystallogr.,Sect.D V. 70 1680 2014.
ISSN: ISSN 0907-4449
PubMed: 24914979
DOI: 10.1107/S1399004714006634
Page generated: Tue Dec 15 06:35:57 2020

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