Sodium in PDB 4cnc: Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein)

The structure of Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein), PDB code: 4cnc was solved by Y.Zhao, T.Malinauskas, K.Harlos, E.Y.Jones, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.33 / 1.77
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.600, 95.820, 65.970, 90.00, 91.14, 90.00
R / Rfree (%)	17.725 / 21.727

The binding sites of Sodium atom in the Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein) (pdb code 4cnc). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein), PDB code: 4cnc:

Sodium binding site 1 out of 1 in the Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human 5T4 (Wnt-Activated Inhibitory Factor 1, Trophoblast Glycoprotein) within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1360 b:57.0 occ:1.00 O B:HOH2063 2.6 32.7 1.0 O B:HOH2064 2.6 37.9 1.0 O B:HOH2074 3.1 35.4 1.0 NZ B:LYS310 3.3 35.2 1.0 OG1 B:THR307 3.6 31.3 1.0 CG1 B:VAL306 4.0 25.2 1.0 CE B:LYS310 4.2 33.9 1.0 CD B:LYS310 4.2 30.3 1.0 O B:LEU337 4.4 28.0 1.0 CA B:THR307 4.5 25.8 1.0 N B:THR307 4.5 25.9 1.0 N B:SER339 4.6 32.1 1.0 CB B:THR307 4.6 28.1 1.0 CA B:ASN338 4.6 28.8 1.0 C B:ASN338 4.9 29.8 1.0 C B:VAL306 4.9 24.3 1.0 CB B:VAL306 4.9 23.7 1.0

Y.Zhao, T.Malinauskas, K.Harlos, E.Y.Jones. Structural Insights Into the Inhibition of Wnt Signaling By Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1. Structure V. 22 612 2014.
ISSN: ISSN 0969-2126
PubMed: 24582434
DOI: 10.1016/J.STR.2014.01.009