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Sodium in PDB 4cit: Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase

Enzymatic activity of Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase

All present enzymatic activity of Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase:
1.11.1.8;

Protein crystallography data

The structure of Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase, PDB code: 4cit was solved by E.Rebuffet, L.Delage, J.B.Fournier, J.Rzonca, P.Potin, G.Michel, M.Czjzek, C.Leblanc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.01 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.800, 84.400, 117.400, 90.00, 90.00, 90.00
R / Rfree (%) 13.962 / 18.034

Other elements in 4cit:

The structure of Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase also contains other interesting chemical elements:

Vanadium (V) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase (pdb code 4cit). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase, PDB code: 4cit:

Sodium binding site 1 out of 1 in 4cit

Go back to Sodium Binding Sites List in 4cit
Sodium binding site 1 out of 1 in the Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the First Bacterial Vanadium Dependant Iodoperoxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1454

b:14.4
occ:1.00
 O A:ALA70 2.2 12.2 1.0
O A:TYR76 2.3 12.2 1.0
O A:HOH2048 2.3 26.4 1.0
O A:ASN73 2.4 14.5 1.0
O A:HOH2052 2.4 24.9 1.0
O A:HOH2047 2.9 32.0 1.0
C A:ALA70 3.3 11.8 1.0
C A:ASN73 3.4 17.3 1.0
C A:TYR76 3.5 11.3 1.0
CA A:ALA70 3.8 10.9 1.0
CA A:ASP74 3.9 19.3 1.0
N A:ASP74 4.1 18.1 1.0
N A:TYR76 4.1 11.2 1.0
N A:ASN73 4.2 14.2 1.0
CA A:TYR76 4.4 10.7 1.0
C A:ASP74 4.4 18.7 1.0
CB A:ALA70 4.4 10.8 1.0
N A:ASN77 4.4 10.3 1.0
N A:ALA71 4.4 12.7 1.0
CA A:ASN77 4.5 11.6 1.0
CA A:ASN73 4.5 15.7 1.0
O A:HOH2059 4.7 25.3 1.0
O A:ASP74 4.7 20.0 1.0
C A:ALA71 4.8 15.0 1.0
CA A:ALA71 4.8 13.7 1.0
OD1 A:ASP74 4.8 23.8 0.5
N A:ASN75 4.8 16.8 1.0
N A:THR72 4.9 14.3 1.0
O A:VAL69 4.9 13.4 1.0
CB A:TYR76 4.9 10.7 1.0

Reference:

J.B.Fournier, E.Rebuffet, L.Delage, R.Grijol, L.Meslet-Cladiere, J.Rzonca, P.Potin, G.Michel, M.Czjzek, C.Leblanc. The Bacterial Vanadium Iodoperoxidase From the Marine Flavobacteriaceae Zobellia Galactanivorans Reveals Novel Molecular and Evolutionary Features of Halide Specificity in This Enzyme Family. Appl.Environ.Microbiol. 2014.
ISSN: ESSN 1098-5336
PubMed: 25261522
DOI: 10.1128/AEM.02430-14
Page generated: Tue Dec 15 06:35:49 2020

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