Sodium in PDB 4cic: T. Potens Iscr

The structure of T. Potens Iscr, PDB code: 4cic was solved by J.A.Santos, S.Macedo-Ribeiro, P.J.B.Pereira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.817 / 1.60
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	53.585, 53.585, 118.382, 90.00, 90.00, 90.00
R / Rfree (%)	20.21 / 22.03

The binding sites of Sodium atom in the T. Potens Iscr (pdb code 4cic). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the T. Potens Iscr, PDB code: 4cic:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the T. Potens Iscr


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of T. Potens Iscr within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1150 b:32.3 occ:1.00 O A:GLU84 2.2 40.8 1.0 O A:VAL82 2.5 26.0 1.0 O A:ARG81 2.5 28.2 1.0 C A:VAL82 3.1 26.2 1.0 C A:GLU84 3.4 41.4 1.0 O A:HOH2053 3.5 41.8 1.0 CA A:VAL82 3.6 21.8 1.0 C A:ARG81 3.6 25.5 1.0 N A:GLU84 3.8 29.2 1.0 N A:VAL82 4.1 23.6 1.0 N A:LEU83 4.1 21.1 1.0 CA A:GLU84 4.2 28.9 1.0 C A:LEU83 4.2 24.9 1.0 N A:GLY85 4.4 48.4 1.0 CA A:GLY85 4.6 61.3 1.0 CA A:LEU83 4.6 24.5 1.0 O A:LEU83 4.7 26.5 1.0 CB A:VAL82 4.9 27.6 1.0 CA A:ARG81 5.0 25.9 1.0

Sodium binding site 2 out of 2 in the T. Potens Iscr


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of T. Potens Iscr within 5.0Å range: probe atom residue distance (Å) B Occ B:Na1149 b:32.3 occ:1.00 O B:GLU84 2.2 40.5 1.0 O B:VAL82 2.5 25.8 1.0 O B:ARG81 2.6 27.3 1.0 C B:VAL82 3.1 23.6 1.0 C B:GLU84 3.4 41.7 1.0 CA B:VAL82 3.6 21.1 1.0 C B:ARG81 3.7 26.9 1.0 N B:GLU84 3.8 31.8 1.0 N B:VAL82 4.1 22.9 1.0 N B:LEU83 4.1 19.8 1.0 C B:LEU83 4.2 29.8 1.0 CA B:GLU84 4.2 31.7 1.0 N B:GLY85 4.4 43.2 1.0 CA B:GLY85 4.5 58.3 1.0 CA B:LEU83 4.6 20.3 1.0 O B:LEU83 4.6 27.1 1.0 CB B:VAL82 4.9 26.0 1.0 CA B:ARG81 5.0 24.9 1.0

J.A.Santos, N.Alonso-Garcia, S.Macedo-Ribeiro, P.J.B.Pereira. The Unique Regulation of Iron-Sulfur Cluster Biogenesis in A Gram-Positive Bacterium. Proc.Natl.Acad.Sci.Usa V. 111 E2251 2014.
ISSN: ISSN 0027-8424
PubMed: 24847070
DOI: 10.1073/PNAS.1322728111