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Sodium in PDB 4ccs: The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria

Protein crystallography data

The structure of The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria, PDB code: 4ccs was solved by S.Bali, S.E.Rollauer, P.Roversi, E.Raux-Deery, S.M.Lea, M.J.Warren, S.J.Ferguson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.22 / 1.90
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 130.450, 130.450, 56.850, 90.00, 90.00, 120.00
R / Rfree (%) 19.39 / 23.74

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria (pdb code 4ccs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria, PDB code: 4ccs:

Sodium binding site 1 out of 1 in 4ccs

Go back to Sodium Binding Sites List in 4ccs
Sodium binding site 1 out of 1 in the The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Cbix, the Terminal Enzyme For Biosynthesis of Siroheme in Denitrifying Bacteria within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na309

b:49.2
occ:0.50
C3 A:MLT299 2.3 67.5 1.0
C4 A:MLT299 3.1 69.5 1.0
O4 A:MLT299 3.1 69.5 1.0
O2 A:MLT299 3.3 58.6 1.0
C2 A:MLT299 3.5 65.8 1.0
C1 A:MLT299 3.7 63.0 1.0
CB A:ALA107 3.8 20.3 1.0
O A:HOH2057 3.8 39.4 1.0
O5 A:MLT299 4.3 70.9 1.0
O3 A:MLT299 4.6 66.8 1.0
O1 A:MLT299 4.6 64.6 1.0
O A:HOH2120 5.0 28.7 1.0

Reference:

S.Bali, S.Rollauer, P.Roversi, E.Raux-Deery, S.M.Lea, M.J.Warren, S.J.Ferguson. Identification and Characterization of the 'Missing' Terminal Enzyme For Siroheme Biosynthesis in Alpha- Proteobacteria. Mol.Microbiol. V. 92 153 2014.
ISSN: ISSN 0950-382X
PubMed: 24673795
DOI: 10.1111/MMI.12542
Page generated: Tue Dec 15 06:35:32 2020

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