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Sodium in PDB 4c75: Consensus (All-Con) Beta-Lactamase Class A

Enzymatic activity of Consensus (All-Con) Beta-Lactamase Class A

All present enzymatic activity of Consensus (All-Con) Beta-Lactamase Class A:
3.5.2.6;

Protein crystallography data

The structure of Consensus (All-Con) Beta-Lactamase Class A, PDB code: 4c75 was solved by J.A.Gavira, V.A.Risso, J.M.Sanchez-Ruiz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.850 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.715, 118.834, 118.939, 90.00, 90.00, 90.00
R / Rfree (%) 17.88 / 22.76

Sodium Binding Sites:

The binding sites of Sodium atom in the Consensus (All-Con) Beta-Lactamase Class A (pdb code 4c75). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Consensus (All-Con) Beta-Lactamase Class A, PDB code: 4c75:

Sodium binding site 1 out of 1 in 4c75

Go back to Sodium Binding Sites List in 4c75
Sodium binding site 1 out of 1 in the Consensus (All-Con) Beta-Lactamase Class A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Consensus (All-Con) Beta-Lactamase Class A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na294

b:41.5
occ:1.00
O4 A:SO4291 2.3 39.0 1.0
N A:THR237 2.5 20.1 1.0
OG A:SER70 2.6 39.4 1.0
CB A:SER70 2.9 34.2 1.0
O A:THR237 3.0 27.6 1.0
S A:SO4291 3.0 33.4 1.0
O1 A:SO4291 3.1 45.1 1.0
O3 A:SO4291 3.2 40.3 1.0
CA A:GLY236 3.3 21.9 1.0
C A:GLY236 3.3 23.9 1.0
CA A:THR237 3.4 26.8 1.0
N A:SER70 3.4 23.7 1.0
O A:HOH2069 3.5 49.2 1.0
C A:THR237 3.6 30.4 1.0
CB A:THR237 3.7 27.4 1.0
O A:HOH2067 3.7 27.8 1.0
CA A:SER70 3.8 28.7 1.0
O A:HOH2068 4.0 43.0 1.0
CB A:CYS69 4.1 25.6 1.0
OG1 A:THR237 4.1 29.8 1.0
N A:GLY236 4.4 17.4 1.0
O2 A:SO4291 4.4 42.6 1.0
OD1 A:ASN170 4.4 25.5 1.0
O A:HOH2231 4.4 57.4 1.0
OG A:SER130 4.4 20.4 1.0
O A:GLY236 4.5 18.3 1.0
O A:THR235 4.5 16.6 1.0
C A:CYS69 4.6 22.8 1.0
C A:THR235 4.8 19.5 1.0
N A:GLY238 4.9 26.4 1.0
CA A:CYS69 4.9 20.2 1.0
NZ A:LYS73 4.9 27.0 1.0
C A:SER70 5.0 27.3 1.0

Reference:

V.A.Risso, J.A.Gavira, E.A.Gaucher, J.M.Sanchez-Ruiz. Phenotypic Comparisons of Consensus Variants Versus Laboratory Resurrections of Precambrian Proteins. Proteins V. 82 887 2014.
ISSN: ISSN 0887-3585
PubMed: 24710963
DOI: 10.1002/PROT.24575
Page generated: Tue Dec 15 06:35:24 2020

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